ENSMUSG00000048347


Mus musculus

Features
Gene ID: ENSMUSG00000048347
  
Biological name :Pcdhb18
  
Synonyms : Pcdhb18 / Protocadherin beta-18 / Q91Y02
  
Possible biological names infered from orthology : PCDHB10 / PCDHB9 / protocadherin beta 10 / protocadherin beta 9 / Q9UN67 / Q9Y5E1
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B3
Gene start: 37489465
Gene end: 37494505
  
Corresponding Affymetrix probe sets: 10455118 (MoGene1.0st)   1421723_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000052113
NCBI entrez gene - 93889     See in Manteia.
MGI - MGI:2136756
RefSeq - NM_053143
RefSeq Peptide - NP_444373
swissprot - Q91Y02
Ensembl - ENSMUSG00000048347
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000038668Gallus gallus
 ENSGALG00000045780Gallus gallus
 PCDHB9ENSG00000177839Homo sapiens
 Q9UN67ENSG00000120324Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdhb20 / protocadherin beta 20 / Q9Y5E9* / PCDHB14* / protocadherin beta 14*ENSMUSG0000004619171
Pcdhb2 / protocadherin beta 2 / Q9Y5E7*ENSMUSG0000005159971
Pcdhb15 / protocadherin beta 15 / PCDHB7* / Q9Y5E2* / protocadherin beta 7*ENSMUSG0000004703371
Pcdhb16 / Q9Y5F0* / PCDHB8* / Q9UN66* / PCDHB13* / protocadherin beta 8* / protocadherin beta 13*ENSMUSG0000004791069
Pcdhb3 / protocadherin beta 3 / Q9Y5E6*ENSMUSG0000004549869
Pcdhb17 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004638769
Pcdhb5 / PCDHB4* / Q9Y5E5* / protocadherin beta 4*ENSMUSG0000006368769
Q6PB90 / Pcdhb14 / Protocadherin beta-14 ENSMUSG0000004404368
Pcdhb4 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004568968
Pcdhb9 / protocadherin beta 9 / PCDHB4* / Q9Y5E5* / protocadherin beta 4*ENSMUSG0000005124268
Pcdhb22 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000007359168
Pcdhb13 / protocadherin beta 13 / PCDHB6* / Q9Y5E3* / protocadherin beta 6*ENSMUSG0000004730768
Pcdhb12 / protocadherin beta 12 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004345867
Pcdhb7 / PCDHB4* / Q9Y5E5* / protocadherin beta 4*ENSMUSG0000004506267
Pcdhb11 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000005148667
Pcdhb19 / protocadherin beta 19 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004331367
Pcdhb6 / Q91XZ4 / Protocadherin beta-6 / Q9Y5E4* / PCDHB5* / protocadherin beta 5*ENSMUSG0000005167867
Pcdhb8 / Q91XZ2 / Protocadherin beta-8 / Q9Y5E4* / PCDHB5* / protocadherin beta 5*ENSMUSG0000004587666
Pcdhb21 / protocadherin beta 21ENSMUSG0000004402266
Pcdhb10 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004565766


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007268 chemical synaptic transmission IBA
 biological_processGO:0007416 synapse assembly IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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