ENSMUSG00000050621


Mus musculus

Features
Gene ID: ENSMUSG00000050621
  
Biological name :Rps27rt
  
Synonyms : Q6ZWU9 / ribosomal protein S27, retrogene / Rps27rt
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 9
Strand: -1
Band: F3
Gene start: 114982366
Gene end: 114982739
  
Corresponding Affymetrix probe sets: 10499748 (MoGene1.0st)   10597490 (MoGene1.0st)   10338232 (MoGene1.0st)   10339822 (MoGene1.0st)   10340193 (MoGene1.0st)   10340245 (MoGene1.0st)   10340957 (MoGene1.0st)   1415716_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000060523
NCBI entrez gene - 100043813     See in Manteia.
MGI - MGI:3704345
RefSeq - NM_001190258
RefSeq Peptide - NP_001177187
swissprot - Q6ZWU9
Ensembl - ENSMUSG00000050621
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01079011.1ENSDARG00000100513Danio rerio
 RPS27ENSGALG00000037441Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rps27 / Q6ZWU9 / 40S ribosomal protein S27 / P42677* / ribosomal protein S27*ENSMUSG00000090733100
Q6ZWY3 / Rps27l / ribosomal protein S27-like / Q71UM5*ENSMUSG0000003678189


Protein motifs (from Interpro)
Interpro ID Name
 IPR000592  Ribosomal protein S27e
 IPR011332  Zinc-binding ribosomal protein
 IPR023407  Ribosomal protein S27e, zinc-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 biological_processGO:0006364 rRNA processing ISS
 biological_processGO:0006412 translation IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
RHO GTPases Activate Formins
Mitotic Prometaphase
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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