ENSMUSG00000051255


Mus musculus

Features
Gene ID: ENSMUSG00000051255
  
Biological name :Gm6563
  
Synonyms : Gm6563 / predicted pseudogene 6563 / Q9D1J3
  
Possible biological names infered from orthology : P82979 / SAP domain containing ribonucleoprotein / SARNP
  
Species: Mus musculus
  
Chr. number: 19
Strand: 1
Band: B
Gene start: 23675844
Gene end: 23676712
  
Corresponding Affymetrix probe sets: 10367422 (MoGene1.0st)   10462100 (MoGene1.0st)   1416095_x_at (Mouse Genome 430 2.0 Array)   1439438_a_at (Mouse Genome 430 2.0 Array)   1456626_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000137244
MGI - MGI:3646907
swissprot - B2RXM7
swissprot - Q9D1J3
Ensembl - ENSMUSG00000051255
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sarnpENSDARG00000059357Danio rerio
 SARNPENSG00000205323Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Sarnp / Q9D1J3 / SAP domain-containing ribonucleoprotein / P82979*ENSMUSG00000078427100


Protein motifs (from Interpro)
Interpro ID Name
 IPR003034  SAP domain
 IPR036361  SAP domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006406 mRNA export from nucleus ISS
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0000346 transcription export complex ISS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0016607 nuclear speck ISO
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule ISO
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IMP
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0050733 RS domain binding IPI


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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