ENSMUSG00000078427


Mus musculus

Features
Gene ID: ENSMUSG00000078427
  
Biological name :Sarnp
  
Synonyms : Q9D1J3 / SAP domain-containing ribonucleoprotein / Sarnp
  
Possible biological names infered from orthology : P82979
  
Species: Mus musculus
  
Chr. number: 10
Strand: 1
Band: D3
Gene start: 128817333
Gene end: 128877629
  
Corresponding Affymetrix probe sets: 10367422 (MoGene1.0st)   10462100 (MoGene1.0st)   1416095_x_at (Mouse Genome 430 2.0 Array)   1439438_a_at (Mouse Genome 430 2.0 Array)   1456626_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000151317
Ensembl peptide - ENSMUSP00000151656
Ensembl peptide - ENSMUSP00000100863
NCBI entrez gene - 66118     See in Manteia.
MGI - MGI:1913368
RefSeq - XM_011243524
RefSeq - NM_025364
RefSeq - XM_006513949
RefSeq - XM_006513950
RefSeq - XM_006513951
RefSeq - XM_011243523
RefSeq Peptide - NP_079640
RefSeq Peptide - NP_001346335
RefSeq Peptide - NP_001346336
swissprot - A0A1W2P6N2
swissprot - A0A1W2P7G2
swissprot - Q9D1J3
swissprot - B2RXM7
Ensembl - ENSMUSG00000078427
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sarnpENSDARG00000059357Danio rerio
 SARNPENSG00000205323Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Gm6563 / Q9D1J3 / predicted pseudogene 6563 / SARNP* / P82979* / SAP domain containing ribonucleoprotein*ENSMUSG00000051255100


Protein motifs (from Interpro)
Interpro ID Name
 IPR003034  SAP domain
 IPR036361  SAP domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006406 mRNA export from nucleus ISS
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0000346 transcription export complex ISS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0016607 nuclear speck ISO
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule ISO
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IMP
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0050733 RS domain binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001488 increased startle reflex "reduced threshold or more severe reflex response to variable stimuli, often auditory; usually measured by amplitude of whole body flinch" [What s Wrong With My Mouse?:ISBN 0-471-31639-3, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Rxfp2tm1b(EUCOMM)Wtsi/Rxfp2tm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Rxfp2tm1b(EUCOMM)Wtsi/Ieg

 MP:0010850 increased effector memory CD8-positive, alpha-beta T cell number "increased number of CD8-positive, alpha beta memory T cells with the phenotype CCR7-negative, CD127-positive, CD45RO-positive, and CD25-negative" [CL:0000913, GO_REF:0000031, GOC:add, GOC:pam, PMID:20146720]
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Allelic Composition: Rxfp2tm1b(EUCOMM)Wtsi/Rxfp2tm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Rxfp2tm1b(EUCOMM)Wtsi/Ieg

 MP:0011968 decreased threshold for auditory brainstem response "reduction in the value at which one or more sound frequencies or broadband clicks first elicits a recordable response generated by electrical activity of neurons in the ascending auditory system" [MGI:csmith]
Show

Allelic Composition: Rxfp2tm1b(EUCOMM)Wtsi/Rxfp2tm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Rxfp2tm1b(EUCOMM)Wtsi/Ieg

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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