ENSMUSG00000051860


Mus musculus

Features
Gene ID: ENSMUSG00000051860
  
Biological name :Samd7
  
Synonyms : Q8C8Y5 / Samd7 / Sterile alpha motif domain-containing protein 7
  
Possible biological names infered from orthology : Q7Z3H4 / sterile alpha motif domain containing 7
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: A3
Gene start: 30746293
Gene end: 30767174
  
Corresponding Affymetrix probe sets: 10491252 (MoGene1.0st)   1430817_at (Mouse Genome 430 2.0 Array)   1455782_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000103897
Ensembl peptide - ENSMUSP00000133333
Ensembl peptide - ENSMUSP00000133687
NCBI entrez gene - 75953     See in Manteia.
MGI - MGI:1923203
RefSeq - NM_029489
RefSeq - XM_017319791
RefSeq Peptide - NP_083765
swissprot - G3UWL1
swissprot - Q8C8Y5
Ensembl - ENSMUSG00000051860
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 samd7ENSDARG00000060354Danio rerio
 SAMD7ENSGALG00000009383Gallus gallus
 SAMD7ENSG00000187033Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q1RNF8 / Samd11 / Sterile alpha motif domain-containing protein 11 / Q96NU1* / sterile alpha motif domain containing 11*ENSMUSG0000009635124
Phc2 / Q9QWH1 / Polyhomeotic-like protein 2 / Q8IXK0* / polyhomeotic homolog 2*ENSMUSG0000002879618
Phc3 / Q8CHP6 / Polyhomeotic-like protein 3 / Q8NDX5* / polyhomeotic homolog 3*ENSMUSG0000003765218
Phc1 / Mus musculus polyhomeotic 1 (Phc1), transcript variant 5, mRNA. / P78364* / polyhomeotic homolog 1*ENSMUSG0000004066917


Protein motifs (from Interpro)
Interpro ID Name
 IPR001660  Sterile alpha motif domain
 IPR013761  Sterile alpha motif/pointed domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010629 negative regulation of gene expression IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001325 abnormal retina morphology "structural or developmental anomaly of the thin layer of neural tissue lining the back of the eyeball which contains visual receptors " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Sox10tm1Weg/Sox10+
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C3H

 MP:0008456 abnormal retinal rod cell outer segment morphology "any strucutral anomaly of the retinal rod cell region which contains stacks of membranous discs separate from the outer cell membrane that are rich in the visual pigment rhodopsin" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Sox10tm1Weg/Sox10+
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C3H

 MP:0012143 decreased a wave amplitude "reduction in the size (height or maximum displacement) of the a wave as measured in the electroretinogram" [MGI:csmith]
Show

Allelic Composition: Sox10tm1Weg/Sox10+
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C3H

 MP:0012144 decreased b wave amplitude "reduction in the size (height or maximum displacement) of the b wave as measured in the electroretinogram" [MGI:csmith]
Show

Allelic Composition: Sox10tm1Weg/Sox10+
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C3H

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr