ENSMUSG00000054727


Mus musculus

Features
Gene ID: ENSMUSG00000054727
  
Biological name :1700013H16Rik
  
Synonyms : 1700013H16Rik / RIKEN cDNA 1700013H16 gene
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: A5
Gene start: 53742901
Gene end: 53757831
  
Corresponding Affymetrix probe sets: 10604643 (MoGene1.0st)   1453331_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000063474
NCBI entrez gene - 75514     See in Manteia.
MGI - MGI:1922764
RefSeq - NM_001200013
RefSeq - XM_006535361
RefSeq Peptide - NP_001186942
swissprot - Q9DAC5
Ensembl - ENSMUSG00000054727
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sycp3ENSDARG00000013438Danio rerio
 SYCP3ENSGALG00000012766Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Sycp3 / synaptonemal complex protein 3 / Q8IZU3*ENSMUSG0000002005931
Gm28510ENSMUSG0000010139619
Gm29564ENSMUSG0000009979218
Gm20916ENSMUSG0000009474618
Gm20908ENSMUSG0000010176618
Gm21477ENSMUSG0000009439918
Gm20850ENSMUSG0000010090218
Gm20931ENSMUSG0000009457018
Gm20890ENSMUSG0000010005518
Gm20920ENSMUSG0000010048518
Gm21366ENSMUSG0000010391918
Gm28897ENSMUSG0000009974018
Gm20870ENSMUSG0000010053518
Gm21095ENSMUSG0000009515318
Gm21173ENSMUSG0000010070818
Gm20903ENSMUSG0000009978218
Gm21497ENSMUSG0000010072618
Gm20906ENSMUSG0000009985618
Gm28827ENSMUSG0000009992518
Gm20894ENSMUSG0000010115818


Protein motifs (from Interpro)
Interpro ID Name
 IPR006888  XLR/SYCP3/FAM9 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0051321 meiotic cell cycle IBA
 cellular_componentGO:0000785 chromatin IDA
 cellular_componentGO:0000800 lateral element IBA
 cellular_componentGO:0001741 XY body IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005730 nucleolus IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr