ENSMUSG00000057193


Mus musculus

Features
Gene ID: ENSMUSG00000057193
  
Biological name :Slc44a2
  
Synonyms : Q8BY89 / Slc44a2 / solute carrier family 44, member 2
  
Possible biological names infered from orthology : Q8IWA5
  
Species: Mus musculus
  
Chr. number: 9
Strand: 1
Band: A3
Gene start: 21320698
Gene end: 21355028
  
Corresponding Affymetrix probe sets: 10583586 (MoGene1.0st)   1428065_at (Mouse Genome 430 2.0 Array)   1438559_x_at (Mouse Genome 430 2.0 Array)   1438860_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000150147
Ensembl peptide - ENSMUSP00000151150
Ensembl peptide - ENSMUSP00000150612
Ensembl peptide - ENSMUSP00000034697
Ensembl peptide - ENSMUSP00000149795
NCBI entrez gene - 68682     See in Manteia.
MGI - MGI:1915932
RefSeq - XM_006510575
RefSeq - XM_011242593
RefSeq - XM_006510576
RefSeq - NM_001199186
RefSeq - NM_152808
RefSeq Peptide - NP_001186115
RefSeq Peptide - NP_690021
swissprot - Q8BY89
swissprot - A0A1L1SVG6
swissprot - A0A1L1SS87
swissprot - A0A1L1SU40
Ensembl - ENSMUSG00000057193
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc44a2ENSDARG00000037059Danio rerio
 Q8IWA5ENSG00000129353Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5RJI2 / Slc44a5 / solute carrier family 44, member 5 / Q8NCS7*ENSMUSG0000002836052
Q91VA1 / Slc44a4 / solute carrier family 44, member 4 / Q53GD3*ENSMUSG0000000703450
Q6X893 / Slc44a1 / solute carrier family 44, member 1 / Q8WWI5*ENSMUSG0000002841225
Q921V7 / Slc44a3 / solute carrier family 44, member 3 / Q8N4M1*ENSMUSG0000003986524


Protein motifs (from Interpro)
Interpro ID Name
 IPR007603  Choline transporter-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Synthesis of PC
Transport of bile salts and organic acids, metal ions and amine compounds
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000042 abnormal organ of Corti "abnormalities associated with the highly specialized epithelium in the floor of the ductus cochlearis; also referred to a spiral organ (organum spirale), or acoustic papilla" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Nkx2-5tm2.1Mwc/Nkx2-5+
Genetic Background: B6J.Cg-Nkx2-5tm2.1Mwc/Mwc

Allelic Composition: Slc44a2tm1.2Tec/Slc44a2+
Genetic Background: FVB.129(Cg)-Slc44a2tm1.2Tec

 MP:0001265 reduced body size "smaller than average body weight, height and/or length of an organism compared to controls" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:23170]
Show

Allelic Composition: Nkx2-5tm2.1Mwc/Nkx2-5+
Genetic Background: B6J.Cg-Nkx2-5tm2.1Mwc/Mwc

 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Nkx2-5tm2.1Mwc/Nkx2-5+
Genetic Background: B6J.Cg-Nkx2-5tm2.1Mwc/Mwc

 MP:0002855 abnormal cochlear ganglion morphology "malformation, malfunction or absence of the group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Nkx2-5tm2.1Mwc/Nkx2-5+
Genetic Background: B6J.Cg-Nkx2-5tm2.1Mwc/Mwc

Allelic Composition: Slc44a2tm1.2Tec/Slc44a2+
Genetic Background: FVB.129(Cg)-Slc44a2tm1.2Tec

 MP:0004396 decreased cochlear inner hair cell number "decreased number (or less than the expected single row) of the flask-shaped inner hair sensory cells of the organ of Corti" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Nkx2-5tm2.1Mwc/Nkx2-5+
Genetic Background: B6J.Cg-Nkx2-5tm2.1Mwc/Mwc

 MP:0004402 decreased cochlear outer hair cell number "decreased number (or less than the expected 3 rows) of the columnar outer hair sensory cells of the organ of Corti" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Nkx2-5tm2.1Mwc/Nkx2-5+
Genetic Background: B6J.Cg-Nkx2-5tm2.1Mwc/Mwc

Allelic Composition: Slc44a2tm1.2Tec/Slc44a2+
Genetic Background: FVB.129(Cg)-Slc44a2tm1.2Tec

 MP:0004740 sensorineural hearing loss "a form of progressive hearing loss due to a lesion of the auditory division of cranial nerve VIII or the inner ear" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Nkx2-5tm2.1Mwc/Nkx2-5+
Genetic Background: B6J.Cg-Nkx2-5tm2.1Mwc/Mwc

 MP:0004748 increased susceptibility to age-related hearing loss "greater than normal loss of hearing associated with advancing age, manifest as reduced ability to perceive or discriminate sounds; the pattern and age of onset vary" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Nkx2-5tm2.1Mwc/Nkx2-5+
Genetic Background: B6J.Cg-Nkx2-5tm2.1Mwc/Mwc

 MP:0011967 increased or absent threshold for auditory brainstem response "increase in the value at which one or more sound frequencies or broadband clicks first elicits a recordable response generated by electrical activity of neurons in the ascending auditory system, or complete lack of a recordable response at any frequency or broadband click" [MGI:csmith]
Show

Allelic Composition: Nkx2-5tm2.1Mwc/Nkx2-5+
Genetic Background: B6J.Cg-Nkx2-5tm2.1Mwc/Mwc

Allelic Composition: Slc44a2tm1.2Tec/Slc44a2+
Genetic Background: FVB.129(Cg)-Slc44a2tm1.2Tec

 MP:0013808 abnormal tunnel of Corti morphology "any structrual anomaly of the triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti" [MGI:Anna]
Show

Allelic Composition: Nkx2-5tm2.1Mwc/Nkx2-5+
Genetic Background: B6J.Cg-Nkx2-5tm2.1Mwc/Mwc

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr