ENSMUSG00000058600


Mus musculus

Features
Gene ID: ENSMUSG00000058600
  
Biological name :Rpl30
  
Synonyms : P62889 / ribosomal protein L30 / Rpl30
  
Possible biological names infered from orthology : P62888
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: B3.1
Gene start: 34440505
Gene end: 34443640
  
Corresponding Affymetrix probe sets: 10385570 (MoGene1.0st)   10397699 (MoGene1.0st)   10428074 (MoGene1.0st)   10433562 (MoGene1.0st)   10433902 (MoGene1.0st)   10443193 (MoGene1.0st)   10499198 (MoGene1.0st)   10537349 (MoGene1.0st)   10600027 (MoGene1.0st)   10606255 (MoGene1.0st)   10606538 (MoGene1.0st)   1418273_a_at (Mouse Genome 430 2.0 Array)   1438076_at (Mouse Genome 430 2.0 Array)   1456266_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000009039
Ensembl peptide - ENSMUSP00000106014
Ensembl peptide - ENSMUSP00000154172
NCBI entrez gene - 19946     See in Manteia.
MGI - MGI:98037
RefSeq - NM_001163485
RefSeq - NM_009083
RefSeq Peptide - NP_001156957
RefSeq Peptide - NP_033109
swissprot - P62889
swissprot - Q58DZ3
Ensembl - ENSMUSG00000058600
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl30ENSDARG00000035871Danio rerio
 RPL30ENSGALG00000029897Gallus gallus
 RPL30ENSG00000156482Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000231  Ribosomal protein L30e
 IPR004038  Ribosomal protein L7Ae/L30e/S12e/Gadd45
 IPR022991  Ribosomal protein L30e, conserved site
 IPR029064  50S ribosomal protein L30e-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0031640 killing of cells of other organism ISO
 biological_processGO:0050829 defense response to Gram-negative bacterium ISO
 biological_processGO:0061844 antimicrobial humoral immune response mediated by antimicrobial peptide ISO
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 cellular_componentGO:0031012 extracellular matrix ISO
 cellular_componentGO:0042788 polysomal ribosome IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr