ENSMUSG00000070291


Mus musculus

Features
Gene ID: ENSMUSG00000070291
  
Biological name :Ddx43
  
Synonyms : Ddx43 / DEAD-box helicase 43
  
Possible biological names infered from orthology : Q9NXZ2
  
Species: Mus musculus
  
Chr. number: 9
Strand: 1
Band: E1
Gene start: 78395777
Gene end: 78423587
  
Corresponding Affymetrix probe sets: 10587350 (MoGene1.0st)   1441045_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000108994
NCBI entrez gene - 100048658     See in Manteia.
MGI - MGI:3642857
RefSeq - XM_006510734
RefSeq - NM_001191044
RefSeq - XM_006510732
RefSeq - XM_006510733
RefSeq Peptide - NP_001177973
swissprot - D3Z6P9
Ensembl - ENSMUSG00000070291
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx43ENSDARG00000022614Danio rerio
 ENSGALG00000015928Gallus gallus
 DDX43ENSG00000080007Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ddx17 / Q501J6 / Probable ATP-dependent RNA helicase DDX17 / Q92841* / DEAD-box helicase 17*ENSMUSG0000005506532
Ddx5 / Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5), transcript variant 3, mRNA. / P17844* / DEAD-box helicase 5*ENSMUSG0000002071932
Ddx42 / Q810A7 / ATP-dependent RNA helicase DDX42 / Q86XP3* / DEAD-box helicase 42*ENSMUSG0000002070530


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR036612  K Homology domain, type 1 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr