ENSMUSG00000071273


Mus musculus

Features
Gene ID: ENSMUSG00000071273
  
Biological name :Gm5145
  
Synonyms : Gm5145
  
Possible biological names infered from orthology : P09012 / small nuclear ribonucleoprotein polypeptide A / SNRPA
  
Species: Mus musculus
  
Chr. number: 17
Strand: 1
Band: A3.2
Gene start: 20570362
Gene end: 20571198
  
Corresponding Affymetrix probe sets: 10442143 (MoGene1.0st)   1417274_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000093293
MGI - MGI:3645482
swissprot - F8VQ88
Ensembl - ENSMUSG00000071273
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpaENSDARG00000018890Danio rerio
 SNRPAENSG00000077312Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Snrpa / Q62189 / U1 small nuclear ribonucleoprotein A / P09012* / small nuclear ribonucleoprotein polypeptide A*ENSMUSG0000006147992
Q9CQI7 / Snrpb2 / U2 small nuclear ribonucleoprotein B ENSMUSG0000000833351


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0030619 U1 snRNA binding IBA
 molecular_functionGO:0035614 snRNA stem-loop binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
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contact: otassy@igbmc.fr