ENSMUSG00000008333


Mus musculus

Features
Gene ID: ENSMUSG00000008333
  
Biological name :Snrpb2
  
Synonyms : Q9CQI7 / Snrpb2 / U2 small nuclear ribonucleoprotein B
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: G1
Gene start: 143063039
Gene end: 143072853
  
Corresponding Affymetrix probe sets: 10476620 (MoGene1.0st)   1426613_a_at (Mouse Genome 430 2.0 Array)   1452131_at (Mouse Genome 430 2.0 Array)   1452422_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000120137
Ensembl peptide - ENSMUSP00000008477
NCBI entrez gene - 20639     See in Manteia.
MGI - MGI:104805
RefSeq - NM_021335
RefSeq Peptide - NP_067310
swissprot - A2CES4
swissprot - Q9CQI7
Ensembl - ENSMUSG00000008333
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpb2ENSDARG00000039424Danio rerio
 SNRPB2ENSGALG00000026999Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Snrpa / Q62189 / U1 small nuclear ribonucleoprotein A / P09012* / small nuclear ribonucleoprotein polypeptide A*ENSMUSG0000006147968
Gm5145 / SNRPA* / P09012* / small nuclear ribonucleoprotein polypeptide A*ENSMUSG0000007127363


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034562  U2 small nuclear ribonucleoprotein B"", RNA recognition motif 2
 IPR034564  U2 small nuclear ribonucleoprotein B"", RNA recognition motif 1
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0001650 fibrillar center ISO
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005681 spliceosomal complex ISO
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0005686 U2 snRNP ISO
 cellular_componentGO:0016607 nuclear speck ISO
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome ISS
 cellular_componentGO:0071013 catalytic step 2 spliceosome ISO
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030619 U1 snRNA binding IBA
 molecular_functionGO:0035614 snRNA stem-loop binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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