ENSDARG00000039424


Danio rerio

Features
Gene ID: ENSDARG00000039424
  
Biological name :snrpb2
  
Synonyms : small nuclear ribonucleoprotein polypeptide B2 / snrpb2
  
Possible biological names infered from orthology : P08579 / Q9CQI7 / U2 small nuclear ribonucleoprotein B
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 51702087
Gene end: 51710340
  
Corresponding Affymetrix probe sets: Dr.14007.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000057600
Ensembl peptide - ENSDARP00000126617
NCBI entrez gene - 402896     See in Manteia.
RefSeq - NM_001256190
RefSeq Peptide - NP_001243119
swissprot - R4GDR2
ZFIN ID - ZDB-GENE-060616-2
Ensembl - ENSDARG00000039424
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNRPB2ENSGALG00000026999Gallus gallus
 P08579ENSG00000125870Homo sapiens
 Q9CQI7ENSMUSG00000008333Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snrpa / small nuclear ribonucleoprotein polypeptide A / Q62189* / Gm5145* / P09012* / U1 small nuclear ribonucleoprotein A *ENSDARG0000001889065


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034564  U2 small nuclear ribonucleoprotein B"", RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0030619 U1 snRNA binding IBA
 molecular_functionGO:0035614 snRNA stem-loop binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr