ENSG00000125870


Homo sapiens

Features
Gene ID: ENSG00000125870
  
Biological name :SNRPB2
  
Synonyms : P08579 / small nuclear ribonucleoprotein polypeptide B2 / SNRPB2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: p12.1
Gene start: 16729961
Gene end: 16742563
  
Corresponding Affymetrix probe sets: 1561965_at (Human Genome U133 Plus 2.0 Array)   202505_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000246071
Ensembl peptide - ENSP00000367178
NCBI entrez gene - 6629     See in Manteia.
OMIM - 603520
RefSeq - NM_003092
RefSeq - NM_198220
RefSeq Peptide - NP_003083
RefSeq Peptide - NP_937863
swissprot - P08579
Ensembl - ENSG00000125870
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpb2ENSDARG00000039424Danio rerio
 SNRPB2ENSGALG00000026999Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNRPA / P09012 / small nuclear ribonucleoprotein polypeptide AENSG0000007731239


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034562  U2 small nuclear ribonucleoprotein B"", RNA recognition motif 2
 IPR034564  U2 small nuclear ribonucleoprotein B"", RNA recognition motif 1
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0001650 fibrillar center IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IDA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0005686 U2 snRNP IDA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030619 U1 snRNA binding IBA
 molecular_functionGO:0035614 snRNA stem-loop binding IBA
 molecular_functionGO:0070990 snRNP binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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