ENSMUSG00000073460


Mus musculus

Features
Gene ID: ENSMUSG00000073460
  
Biological name :Pnldc1
  
Synonyms : B2RXZ1 / Pnldc1 / Poly(A)-specific ribonuclease PNLDC1
  
Possible biological names infered from orthology : PARN like, ribonuclease domain containing 1 / Q8NA58
  
Species: Mus musculus
  
Chr. number: 17
Strand: -1
Band: A1
Gene start: 12888902
Gene end: 12910000
  
Corresponding Affymetrix probe sets: 10447860 (MoGene1.0st)   1441098_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000129377
NCBI entrez gene - 240023     See in Manteia.
MGI - MGI:2685159
RefSeq - XM_017317464
RefSeq - NM_001034866
RefSeq - XM_006523327
RefSeq - XM_011246210
RefSeq - XM_006523325
RefSeq - XM_006523326
RefSeq Peptide - NP_001030038
swissprot - B2RXZ1
Ensembl - ENSMUSG00000073460
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PNLDC1ENSGALG00000011624Gallus gallus
 PNLDC1ENSG00000146453Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Parn / poly(A)-specific ribonuclease / O95453*ENSMUSG0000002268525


Protein motifs (from Interpro)
Interpro ID Name
 IPR006941  Ribonuclease CAF1
 IPR012337  Ribonuclease H-like superfamily
 IPR036397  Ribonuclease H superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
 biological_processGO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IDA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0005783 endoplasmic reticulum ISO
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004527 exonuclease activity IEA
 molecular_functionGO:0004535 poly(A)-specific ribonuclease activity ISO
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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