ENSMUSG00000078184


Mus musculus

Features
Gene ID: ENSMUSG00000078184
  
Biological name :Rbm8a2
  
Synonyms : Rbm8a2
  
Possible biological names infered from orthology : Q9Y5S9 / RBM8A / RNA binding motif protein 8A
  
Species: Mus musculus
  
Chr. number: 1
Strand: -1
Band: H4
Gene start: 175977777
Gene end: 175979114
  
Corresponding Affymetrix probe sets: 10360475 (MoGene1.0st)   1418119_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000100599
MGI - MGI:3612447
swissprot - A0A0N4SUH6
Ensembl - ENSMUSG00000078184
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm8aENSDARG00000016516Danio rerio
 RBM8AENSG00000265241Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rbm8a / Q9CWZ3 / RNA-binding protein 8A / Q9Y5S9* / RNA binding motif protein 8A*ENSMUSG0000003837497


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR008111  RNA-binding motif protein 8
 IPR033744  RBM8, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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