ENSDARG00000016516


Danio rerio

Features
Gene ID: ENSDARG00000016516
  
Biological name :rbm8a
  
Synonyms : Q5D018 / rbm8a / RNA binding motif protein 8A
  
Possible biological names infered from orthology : Q9CWZ3 / Q9Y5S9 / Rbm8a2 / RNA-binding protein 8A
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 45922175
Gene end: 45930077
  
Corresponding Affymetrix probe sets: Dr.4412.15.S1_at (Zebrafish Array)   NM_001013345_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000026575
NCBI entrez gene - 503767     See in Manteia.
RefSeq - NM_001013345
RefSeq Peptide - NP_001013363
swissprot - Q5D018
ZFIN ID - ZDB-GENE-050306-51
Ensembl - ENSDARG00000016516
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM8AENSG00000265241Homo sapiens
 Rbm8aENSMUSG00000038374Mus musculus
 Rbm8a2ENSMUSG00000078184Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR008111  RNA-binding motif protein 8
 IPR033744  RBM8, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IBA
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome ISS
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0035145 exon-exon junction complex IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000069297 upf3a / B0S733 / UPF3A, regulator of nonsense mediated mRNA decay / Q9H1J1* / UPF3 regulator of nonsense transcripts homolog A (yeast)*  / complex
 ENSDARG00000029911 casc3 / Q1ECZ4 / cancer susceptibility candidate 3 / Q8K3W3* / O15234* / Protein CASC3 * / cancer susceptibility 3*  / complex
 ENSDARG00000038635 magoh / Q566Y8 / mago homolog, exon junction complex core component / Q96A72* / MAGOHB* / P61326* / P61327* / Protein mago nashi homolog * / mago homolog B, exon junction complex core component*  / complex






 

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