ENSDARG00000038635


Danio rerio

Features
Gene ID: ENSDARG00000038635
  
Biological name :magoh
  
Synonyms : magoh / mago homolog, exon junction complex core component / Q566Y8
  
Possible biological names infered from orthology : MAGOHB / mago homolog B, exon junction complex core component / P61326 / P61327 / Protein mago nashi homolog / Q96A72
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 21133307
Gene end: 21135732
  
Corresponding Affymetrix probe sets: Dr.13517.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000056404
NCBI entrez gene - 100005893     See in Manteia.
swissprot - Q566Y8
ZFIN ID - ZDB-GENE-041216-1
Ensembl - ENSDARG00000038635
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MAGOHENSGALG00000010689Gallus gallus
 MAGOHENSG00000162385Homo sapiens
 MAGOHBENSG00000111196Homo sapiens
 MagohENSMUSG00000028609Mus musculus
 MagohbENSMUSG00000030188Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004023  Mago nashi protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome ISS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0008380 RNA splicing IBA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0035145 exon-exon junction complex IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000029911 casc3 / Q1ECZ4 / cancer susceptibility candidate 3 / Q8K3W3* / O15234* / Protein CASC3 * / cancer susceptibility 3*  / complex
 ENSDARG00000069297 upf3a / B0S733 / UPF3A, regulator of nonsense mediated mRNA decay / Q9H1J1* / UPF3 regulator of nonsense transcripts homolog A (yeast)*  / complex
 ENSDARG00000016516 rbm8a / Q5D018 / RNA binding motif protein 8A / Q9CWZ3* / Q9Y5S9* / Rbm8a2* / RNA-binding protein 8A *  / complex






 

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