ENSMUSG00000079426


Mus musculus

Features
Gene ID: ENSMUSG00000079426
  
Biological name :Arpc4
  
Synonyms : Actin-related protein 2/3 complex subunit 4 / Arpc4 / P59999
  
Possible biological names infered from orthology : P59998
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: E3
Gene start: 113378115
Gene end: 113390448
  
Corresponding Affymetrix probe sets: 10540650 (MoGene1.0st)   1423588_at (Mouse Genome 430 2.0 Array)   1423589_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000114839
Ensembl peptide - ENSMUSP00000131690
Ensembl peptide - ENSMUSP00000144751
Ensembl peptide - ENSMUSP00000145344
NCBI entrez gene - 68089     See in Manteia.
MGI - MGI:1915339
RefSeq - NM_001170485
RefSeq - NM_001170486
RefSeq - NM_026552
RefSeq Peptide - NP_001163956
RefSeq Peptide - NP_001163957
RefSeq Peptide - NP_080828
swissprot - Q3TX55
swissprot - E9PWA7
swissprot - P59999
Ensembl - ENSMUSG00000079426
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arpc4ENSDARG00000054063Danio rerio
 arpc4lENSDARG00000058225Danio rerio
 ARPC4ENSGALG00000006691Gallus gallus
 ARPC4ENSG00000241553Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008384  Actin-related protein 2/3 complex subunit 4
 IPR034666  Arp2/3 complex subunit 2/4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030041 actin filament polymerization IEA
 biological_processGO:0030833 regulation of actin filament polymerization IEA
 biological_processGO:0034314 Arp2/3 complex-mediated actin nucleation ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005885 Arp2/3 protein complex TAS
 cellular_componentGO:0015629 actin cytoskeleton IEA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0030674 protein binding, bridging IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
Regulation of actin dynamics for phagocytic cup formation
EPHB-mediated forward signaling
RHO GTPases Activate WASPs and WAVEs
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000218 increased WBC count "greater than normal WBC numbers" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Ap4e1tm1a(KOMP)Wtsi/Ap4e1tm1a(KOMP)Wtsi
Genetic Background: C57BL/6N-Ap4e1tm1a(KOMP)Wtsi/Wtsi

 MP:0000379 reduced hair follicle number "fewer number of the epidermal invaginations from which the hair shaft develops" [J:15108]
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Allelic Composition: A1cfTg(Myh6-cre/Esr1*)1Jmk/?,Tnni3ktm1Tfo/Tnni3ktm1Tfo
Genetic Background: involves: C57BL/6 * FVB/N

 MP:0000414 alopecia "absence of hair or loss of hair; not usually in reference to primary genetic hairlessness but may be due to dietary, stress, secondary to immune condition" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:30772, J:33796]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0000416 sparse fur "fur that is significantly less dense" [J:46854]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0000648 absent sebaceous gland "missing the holocrine glands of the dermis that secrete sebum into the hair follicles" [tc:Teresa Chu , Mouse Genome Informatics Curator, J:54637]
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Allelic Composition: A1cfTg(Myh6-cre/Esr1*)1Jmk/?,Tnni3ktm1Tfo/Tnni3ktm1Tfo
Genetic Background: involves: C57BL/6 * FVB/N

 MP:0001192 scaly skin "skin covered with shedding scales or flakes" [J:65146]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0001193 psoriasis "chronic skin lesions characterized by inflammation and silvery-scaly patches" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0001194 dermatitis "inflammation of the skin" [J:65146]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0001212 skin lesions "focal patches of inflammation on the skin" [J:30162]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0001219 thickened epidermis "increase in the width of the epidermal cell layer in the skin" [J:65146]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0001242 hyperkeratosis "increased depth of the corneal layer of the epidermis; thickening of the horny layer of the epidermis" [J:1133]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0001874 acanthosis "diffuse hyperplasia of the spinous layer of the skin" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0002074 abnormal hair texture "irregular or unusual appearance of the structure of the hair" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Ap4e1tm1a(KOMP)Wtsi/Ap4e1tm1a(KOMP)Wtsi
Genetic Background: C57BL/6N-Ap4e1tm1a(KOMP)Wtsi/Wtsi

 MP:0002590 increased mean corpuscular volume "greater than the average amount of space occupied by each red blood cell, calculated from the hematocrit and red cell count, in erythrocyte indices" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Ap4e1tm1a(KOMP)Wtsi/Ap4e1tm1a(KOMP)Wtsi
Genetic Background: C57BL/6N-Ap4e1tm1a(KOMP)Wtsi/Wtsi

 MP:0002656 abnormal keratinocyte differentiation "developmental anomaly of the cells of the epidermis that produce keratin in the process of differentiating into the dead and fully keratinized cells of the stratum corneum " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0003427 parakeratosis "abnormal retention of the nuclei of the keratinocytes in the stratum corneum of the epidermis" [smb:Susan M Bello, Mouse Genome Informatics Curator, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0003853 dry skin "skin characterized by the lack of natural or normal moisture" [monikat:Monika Tomczuk, Mouse Genome Informatics Curator]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0005501 abnormal skin physiology "atypical function of the membranous protective covering of the body" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0005567 decreased circulating total protein level "less than the average total concentration of these macromolecules in the blood " [RGD:Rat Genome Database submission]
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Allelic Composition: Ap4e1tm1a(KOMP)Wtsi/Ap4e1tm1a(KOMP)Wtsi
Genetic Background: C57BL/6N-Ap4e1tm1a(KOMP)Wtsi/Wtsi

 MP:0009931 abnormal skin appearance "skin that looks different from the usual state" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

 MP:0010088 decreased circulating fructosamine level "decrease in the concentration in the blood of total non enzymatic glycated proteins in the blood" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Ap4e1tm1a(KOMP)Wtsi/Ap4e1tm1a(KOMP)Wtsi
Genetic Background: C57BL/6N-Ap4e1tm1a(KOMP)Wtsi/Wtsi

 MP:0030529 abnormal head skin morphology "any anomaly in a zone of skin that is part of the head" [UBERON:0001084]
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Allelic Composition: Arpc4tm1c(EUCOMM)Wtsi/Arpc4tm1c(EUCOMM)Wtsi,Krt14tm1(cre)Wbm/Krt14+
Genetic Background: B6.Cg-Arpc4tm1c(EUCOMM)Wtsi Krt14tm1(cre)Wbm

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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