ENSDARG00000002937


Danio rerio

Features
Gene ID: ENSDARG00000002937
  
Biological name :meis1a
  
Synonyms : meis1a / Meis homeobox 1 a
  
Possible biological names infered from orthology : Homeobox protein Meis1 / MEIS1 / Meis homeobox 1 / O00470 / Q60954
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 51475094
Gene end: 51525086
  
Corresponding Affymetrix probe sets: Dr.12173.1.S1_at (Zebrafish Array)   Dr.20994.1.S1_s_at (Zebrafish Array)   NM_131897_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000125440
Ensembl peptide - ENSDARP00000125224
Ensembl peptide - ENSDARP00000026780
NCBI entrez gene - 170455     See in Manteia.
RefSeq - NM_131897
RefSeq - XM_005160125
RefSeq Peptide - NP_571972
swissprot - H0WF09
swissprot - H0WEE7
swissprot - Q7SZP3
ZFIN ID - ZDB-GENE-020122-3
Ensembl - ENSDARG00000002937
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MEIS1ENSGALG00000041626Gallus gallus
 MEIS1ENSG00000143995Homo sapiens
 Meis1ENSMUSG00000020160Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
meis1b / Meis homeobox 1 b / MEIS1* / Q60954* / O00470* / Meis homeobox 1* / Homeobox protein Meis1 *ENSDARG0000001207877
meis2a / meis2b / Meis homeobox 2bENSDARG0000007784071
meis2a / Meis homeobox 2a / MEIS2* / P97367* / O14770* / Meis homeobox 2* / Homeobox protein Meis2 *ENSDARG0000009824069
meis3 / myeloid ecotropic viral integration site 3 / P97368* / Q99687* / Meis homeobox 3* / Homeobox protein Meis3 *ENSDARG0000000279560
pknox2 / pbx/knotted 1 homeobox 2 / Q8BG99* / Q96KN3* / Homeobox protein PKNOX2 *ENSDARG0000005534937
pknox1.1 / pbx/knotted 1 homeobox 1.1 / O70477* / P55347* / PKNOX1* / PBX/knotted 1 homeobox 1* / Homeobox protein PKNOX1 *ENSDARG0000001876535
pknox1.2 / pbx/knotted 1 homeobox 1.2 / O70477* / P55347* / PKNOX1* / PBX/knotted 1 homeobox 1* / Homeobox protein PKNOX1 *ENSDARG0000003654234
tgif1 / TGFB-induced factor homeobox 1 / P70284* / Q15583*ENSDARG0000005933712
FO834857.1 / TGIF2* / Q9GZN2* / TGFB induced factor homeobox 2*ENSDARG0000011289510


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR008422  Homeobox KN domain
 IPR009057  Homeobox-like domain superfamily
 IPR032453  Homeobox protein PKNOX/Meis, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007420 brain development IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000094 blood island blood island macrophage decreased amount , abnormal
blood island neutrophil decreased amount , abnormal
Show

 ZFA:0000445 optic tectum optic tectum decreased size , abnormal
Show

 ZFA:0000823 rhombomere 5 rhombomere 5 broad , abnormal
Show

 ZFA:0000948 rhombomere 3 rhombomere 3 decreased distance rhombomere 5 , abnormal
rhombomere 3 broad , abnormal
Show

 ZFA:0009044 blood cell blood cell decreased amount , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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