ENSDARG00000055349


Danio rerio

Features
Gene ID: ENSDARG00000055349
  
Biological name :pknox2
  
Synonyms : pbx/knotted 1 homeobox 2 / pknox2
  
Possible biological names infered from orthology : Homeobox protein PKNOX2 / Q8BG99 / Q96KN3
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 31019607
Gene end: 31220558
  
Corresponding Affymetrix probe sets: Dr.14027.1.A1_at (Zebrafish Array)   Dr.19887.1.S1_at (Zebrafish Array)   NM_153654_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000123244
Ensembl peptide - ENSDARP00000148751
Ensembl peptide - ENSDARP00000156337
NCBI entrez gene - 386959     See in Manteia.
RefSeq - NM_153654
RefSeq - XM_009305360
RefSeq Peptide - NP_705940
swissprot - Q8AYN1
ZFIN ID - ZDB-GENE-031118-112
Ensembl - ENSDARG00000055349
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PKNOX2ENSGALG00000043103Gallus gallus
 PKNOX2ENSG00000165495Homo sapiens
 Pknox2ENSMUSG00000035934Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pknox1.2 / pbx/knotted 1 homeobox 1.2 / O70477* / P55347* / PKNOX1* / PBX/knotted 1 homeobox 1* / Homeobox protein PKNOX1 *ENSDARG0000003654253
pknox1.1 / pbx/knotted 1 homeobox 1.1 / O70477* / P55347* / PKNOX1* / PBX/knotted 1 homeobox 1* / Homeobox protein PKNOX1 *ENSDARG0000001876551
meis2a / Meis homeobox 2a / MEIS2* / P97367* / O14770* / Meis homeobox 2* / Homeobox protein Meis2 *ENSDARG0000009824033
meis2a / meis2b / Meis homeobox 2bENSDARG0000007784032
meis1a / Meis homeobox 1 a / MEIS1* / Q60954* / O00470* / Meis homeobox 1* / Homeobox protein Meis1 *ENSDARG0000000293730
meis1b / Meis homeobox 1 b / MEIS1* / Q60954* / O00470* / Meis homeobox 1* / Homeobox protein Meis1 *ENSDARG0000001207830
meis3 / myeloid ecotropic viral integration site 3 / P97368* / Q99687* / Meis homeobox 3* / Homeobox protein Meis3 *ENSDARG0000000279529
tgif1 / TGFB-induced factor homeobox 1 / P70284* / Q15583*ENSDARG0000005933710
FO834857.1 / TGIF2* / Q9GZN2* / TGFB induced factor homeobox 2*ENSDARG000001128959


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR008422  Homeobox KN domain
 IPR009057  Homeobox-like domain superfamily
 IPR032453  Homeobox protein PKNOX/Meis, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr