ENSDARG00000002968


Danio rerio

Features
Gene ID: ENSDARG00000002968
  
Biological name :a1cf
  
Synonyms : a1cf / apobec1 complementation factor
  
Possible biological names infered from orthology : Q5YD48 / Q9NQ94
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 6160446
Gene end: 6177894
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000126835
Ensembl peptide - ENSDARP00000157454
swissprot - R4GEC2
ZFIN ID - ZDB-GENE-060824-3
Ensembl - ENSDARG00000002968
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 A1CFENSGALG00000003765Gallus gallus
 A1CFENSG00000148584Homo sapiens
 A1cfENSMUSG00000052595Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbm47 / RNA binding motif protein 47 / A0AV96* / Q91WT8* / RNA-binding protein 47 *ENSDARG0000006198547
rbm46 / RNA binding motif protein 46 / P86049* / Q8TBY0* / Probable RNA-binding protein 46 *ENSDARG0000007945243
hnrnpr / heterogeneous nuclear ribonucleoprotein R / O43390* / heteroous nuclear ribonucleoprotein R isoform a *ENSDARG0000001456935
syncrip / synaptotagmin binding, cytoplasmic RNA interacting protein / O60506* / Q7TMK9*ENSDARG0000004018434
syncripl / synaptotagmin binding, cytoplasmic RNA interacting protein, like / O60506* / Q7TMK9* / SYNCRIP* / synaptotagmin binding cytoplasmic RNA interacting protein*ENSDARG0000002672332
dnd1 / Q7T1H5 / DND microRNA-mediated repression inhibitor 1 / Q6VY05* / Q8IYX4* / Dead end protein homolog 1 *ENSDARG0000002281318


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor
 IPR014720  Double-stranded RNA-binding domain
 IPR033111  APOBEC1 complementation factor
 IPR034538  ACF, RNA recognition motif 1
 IPR034539  ACF, RNA recognition motif 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016556 mRNA modification IEA
 cellular_componentGO:0030895 apolipoprotein B mRNA editing enzyme complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IEA


Pathways (from Reactome)
Pathway description
Formation of the Editosome


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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