ENSDARG00000014569


Danio rerio

Features
Gene ID: ENSDARG00000014569
  
Biological name :hnrnpr
  
Synonyms : heterogeneous nuclear ribonucleoprotein R / hnrnpr
  
Possible biological names infered from orthology : heteroous nuclear ribonucleoprotein R isoform a / O43390
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 72661
Gene end: 82516
  
Corresponding Affymetrix probe sets: Dr.4457.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000134461
Ensembl peptide - ENSDARP00000137219
Ensembl peptide - ENSDARP00000139065
Ensembl peptide - ENSDARP00000016984
Ensembl peptide - ENSDARP00000133587
swissprot - A0A0R4IHN8
swissprot - A0A0R4ITI5
swissprot - A0A0R4ITR2
swissprot - F6PBZ5
ZFIN ID - ZDB-GENE-040426-2766
Ensembl - ENSDARG00000014569
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HNRNPRENSGALG00000000814Gallus gallus
 HNRNPRENSG00000125944Homo sapiens
 HnrnprENSMUSG00000066037Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
syncrip / synaptotagmin binding, cytoplasmic RNA interacting protein / O60506* / Q7TMK9*ENSDARG0000004018474
syncripl / synaptotagmin binding, cytoplasmic RNA interacting protein, like / O60506* / Q7TMK9* / SYNCRIP* / synaptotagmin binding cytoplasmic RNA interacting protein*ENSDARG0000002672363
a1cf / apobec1 complementation factor / Q5YD48* / Q9NQ94*ENSDARG0000000296832
rbm47 / RNA binding motif protein 47 / A0AV96* / Q91WT8* / RNA-binding protein 47 *ENSDARG0000006198530
rbm46 / RNA binding motif protein 46 / P86049* / Q8TBY0* / Probable RNA-binding protein 46 *ENSDARG0000007945229
dnd1 / Q7T1H5 / DND microRNA-mediated repression inhibitor 1 / Q6VY05* / Q8IYX4* / Dead end protein homolog 1 *ENSDARG0000002281314


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006535  HnRNP R/Q splicing factor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048846 axon extension involved in axon guidance IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IDA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009243 CaP motoneuron CaP motoneuron axon decreased length , abnormal
CaP motoneuron axon increased branchiness , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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