ENSDARG00000003098


Danio rerio

Features
Gene ID: ENSDARG00000003098
  
Biological name :kdm5bb
  
Synonyms : kdm5bb / lysine (K)-specific demethylase 5Bb
  
Possible biological names infered from orthology : KDM5B / lysine demethylase 5B / Lysine-specific demethylase 5B / Q80Y84 / Q9UGL1
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 28305213
Gene end: 28342487
  
Corresponding Affymetrix probe sets: Dr.11022.1.A1_at (Zebrafish Array)   NM_001002166_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000124925
Ensembl peptide - ENSDARP00000124215
Ensembl peptide - ENSDARP00000124652
Ensembl peptide - ENSDARP00000102232
Ensembl peptide - ENSDARP00000023794
NCBI entrez gene - 415256     See in Manteia.
RefSeq - NM_001002166
RefSeq Peptide - NP_001002166
swissprot - F8W2P8
swissprot - F1QXN4
swissprot - F8W4E5
swissprot - F8W5Z2
swissprot - G1K2I1
ZFIN ID - ZDB-GENE-030424-1
Ensembl - ENSDARG00000003098
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KDM5BENSGALG00000038948Gallus gallus
 KDM5BENSG00000117139Homo sapiens
 Kdm5bENSMUSG00000042207Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
kdm5ba / lysine (K)-specific demethylase 5Ba / KDM5B* / Q80Y84* / Q9UGL1* / lysine demethylase 5B* / Lysine-specific demethylase 5B *ENSDARG0000005709361
kdm5c / lysine (K)-specific demethylase 5C / KDM5D* / Q9BY66* / P41229* / P41230* / Q62240* / lysine demethylase 5C* / lysine demethylase 5D* / Lysine-specific demethylase 5C * / Lysine-spe...ENSDARG0000000612443
Q1LVC2 / jarid2b / jumonji, AT rich interactive domain 2b / JARID2* / Q62315* / Q92833* / Protein Jumonji * / jumonji and AT-rich interaction domain containing 2*ENSDARG0000006226812
jarid2a / jumonji, AT rich interactive domain 2a / JARID2* / Q62315* / Q92833* / Protein Jumonji * / jumonji and AT-rich interaction domain containing 2*ENSDARG0000006092511


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR001965  Zinc finger, PHD-type
 IPR003347  JmjC domain
 IPR003349  JmjN domain
 IPR004198  Zinc finger, C5HC2-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013637  Lysine-specific demethylase-like domain
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
TFAP2 (AP-2) family regulates transcription of cell cycle factors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr