ENSDARG00000006124


Danio rerio

Features
Gene ID: ENSDARG00000006124
  
Biological name :kdm5c
  
Synonyms : kdm5c / lysine (K)-specific demethylase 5C
  
Possible biological names infered from orthology : KDM5D / lysine demethylase 5C / lysine demethylase 5D / Lysine-specific demethylase 5C / Lysine-specific demethylase 5D / P41229 / P41230 / Q62240 / Q9BY66
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 36983559
Gene end: 37026607
  
Corresponding Affymetrix probe sets: Dr.819.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000110667
NCBI entrez gene - 553406     See in Manteia.
RefSeq - NM_001123234
RefSeq Peptide - NP_001116706
swissprot - B0S6L0
ZFIN ID - ZDB-GENE-060810-94
Ensembl - ENSDARG00000006124
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KDM5CENSG00000126012Homo sapiens
 KDM5DENSG00000012817Homo sapiens
 Kdm5cENSMUSG00000025332Mus musculus
 Kdm5dENSMUSG00000056673Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
kdm5ba / lysine (K)-specific demethylase 5Ba / KDM5B* / Q80Y84* / Q9UGL1* / lysine demethylase 5B* / Lysine-specific demethylase 5B *ENSDARG0000005709342
kdm5bb / lysine (K)-specific demethylase 5Bb / KDM5B* / Q80Y84* / Q9UGL1* / lysine demethylase 5B* / Lysine-specific demethylase 5B *ENSDARG0000000309841
Q1LVC2 / jarid2b / jumonji, AT rich interactive domain 2b / JARID2* / Q62315* / Q92833* / Protein Jumonji * / jumonji and AT-rich interaction domain containing 2*ENSDARG0000006226812
jarid2a / jumonji, AT rich interactive domain 2a / JARID2* / Q62315* / Q92833* / Protein Jumonji * / jumonji and AT-rich interaction domain containing 2*ENSDARG0000006092511


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR001965  Zinc finger, PHD-type
 IPR003347  JmjC domain
 IPR003349  JmjN domain
 IPR004198  Zinc finger, C5HC2-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013637  Lysine-specific demethylase-like domain
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043524 negative regulation of neuron apoptotic process IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
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 ZFA:0001094 whole organism whole organism curved ventral , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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