ENSDARG00000062268


Danio rerio

Features
Gene ID: ENSDARG00000062268
  
Biological name :jarid2b
  
Synonyms : jarid2b / jumonji, AT rich interactive domain 2b / Q1LVC2
  
Possible biological names infered from orthology : JARID2 / jumonji and AT-rich interaction domain containing 2 / Protein Jumonji / Q62315 / Q92833
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 25971000
Gene end: 26156531
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000084269
Ensembl peptide - ENSDARP00000114402
NCBI entrez gene - 558456     See in Manteia.
RefSeq - NM_001202459
RefSeq Peptide - NP_001189388
swissprot - G1K2S7
swissprot - Q1LVC2
swissprot - T1ECU3
ZFIN ID - ZDB-GENE-060503-246
Ensembl - ENSDARG00000062268
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 JARID2ENSGALG00000012702Gallus gallus
 JARID2ENSG00000008083Homo sapiens
 Jarid2ENSMUSG00000038518Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
jarid2a / jumonji, AT rich interactive domain 2a / JARID2* / Q62315* / Q92833* / Protein Jumonji * / jumonji and AT-rich interaction domain containing 2*ENSDARG0000006092551
kdm5bb / lysine (K)-specific demethylase 5Bb / KDM5B* / Q80Y84* / Q9UGL1* / lysine demethylase 5B* / Lysine-specific demethylase 5B *ENSDARG0000000309814
kdm5c / lysine (K)-specific demethylase 5C / KDM5D* / Q9BY66* / P41229* / P41230* / Q62240* / lysine demethylase 5C* / lysine demethylase 5D* / Lysine-specific demethylase 5C * / Lysine-spe...ENSDARG0000000612414
kdm5ba / lysine (K)-specific demethylase 5Ba / KDM5B* / Q80Y84* / Q9UGL1* / lysine demethylase 5B* / Lysine-specific demethylase 5B *ENSDARG0000005709314


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR003347  JmjC domain
 IPR003349  JmjN domain
 IPR004198  Zinc finger, C5HC2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0031061 negative regulation of histone methylation ISS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated ISS
 biological_processGO:0048863 stem cell differentiation ISS
 biological_processGO:0051574 positive regulation of histone H3-K9 methylation ISS
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0035097 histone methyltransferase complex ISS
 cellular_componentGO:0035098 ESC/E(Z) complex ISS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding ISS


Pathways (from Reactome)
Pathway description
PRC2 methylates histones and DNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000098924 suz12b / B0R1D5 / SUZ12 polycomb repressive complex 2b subunit / SUZ12* / Q80U70* / Q15022* / Polycomb protein Suz12 * / SUZ12 polycomb repressive complex 2 subunit*  / complex
 ENSDARG00000099640 eed / Q566T0 / embryonic ectoderm development / O75530* / Q921E6* / Polycomb protein EED *  / complex






 

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