ENSDARG00000003175


Danio rerio

Features
Gene ID: ENSDARG00000003175
  
Biological name :stx5al
  
Synonyms : stx5al / syntaxin 5A, like
  
Possible biological names infered from orthology : Q13190 / Q8K1E0 / STX5 / Stx5a / syntaxin 5
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 26536950
Gene end: 26554325
  
Corresponding Affymetrix probe sets: Dr.14973.1.S1_at (Zebrafish Array)   Dr.14973.2.S1_at (Zebrafish Array)   NM_199630_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000114359
Ensembl peptide - ENSDARP00000023330
NCBI entrez gene - 323105     See in Manteia.
RefSeq - NM_199630
RefSeq Peptide - NP_955924
swissprot - F1QUF6
swissprot - F1QIQ6
ZFIN ID - ZDB-GENE-030131-1825
Ensembl - ENSDARG00000003175
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 STX5ENSG00000162236Homo sapiens
 Stx5aENSMUSG00000010110Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
stx5a / syntaxin 5A / STX5* / Q8K1E0* / Q13190* / syntaxin 5*ENSDARG0000002503366


Protein motifs (from Interpro)
Interpro ID Name
 IPR000727  Target SNARE coiled-coil homology domain
 IPR010989  SNARE
 IPR021538  Syntaxin-5, N-terminal, Sly1p-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0048278 vesicle docking IBA
 cellular_componentGO:0000139 Golgi membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031201 SNARE complex IBA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
Cargo concentration in the ER
COPI-mediated anterograde transport
Intra-Golgi traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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