ENSDARG00000025033


Danio rerio

Features
Gene ID: ENSDARG00000025033
  
Biological name :stx5a
  
Synonyms : stx5a / syntaxin 5A
  
Possible biological names infered from orthology : Q13190 / Q8K1E0 / STX5 / syntaxin 5
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 8594367
Gene end: 8616663
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000034979
NCBI entrez gene - 436605     See in Manteia.
swissprot - Q6DG84
ZFIN ID - ZDB-GENE-040718-18
Ensembl - ENSDARG00000025033
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 STX5ENSG00000162236Homo sapiens
 Stx5aENSMUSG00000010110Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
stx5al / syntaxin 5A, like / STX5* / Stx5a* / Q8K1E0* / Q13190* / syntaxin 5*ENSDARG0000000317576


Protein motifs (from Interpro)
Interpro ID Name
 IPR000727  Target SNARE coiled-coil homology domain
 IPR006012  Syntaxin/epimorphin, conserved site
 IPR010989  SNARE
 IPR021538  Syntaxin-5, N-terminal, Sly1p-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0048278 vesicle docking IBA
 cellular_componentGO:0000139 Golgi membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IBA
 cellular_componentGO:0031201 SNARE complex IBA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
Cargo concentration in the ER
COPI-mediated anterograde transport
Intra-Golgi traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000034885 bet1 / Bet1 golgi vesicular membrane trafficking protein / O15155* / O35623* / BET1 homolog *  / complex
 ENSDARG00000019581 uso1 / USO1 vesicle transport factor / O60763* / Q9Z1Z0* / USO1 vesicle docking factor*  / reaction
 ENSDARG00000020405 napab / N-ethylmaleimide-sensitive factor attachment protein, alpha b / NAPA* / Q9DB05* / P54920* / NSF attachment protein alpha* / Alpha-soluble NSF attachment protein *  / complex / reaction
 ENSDARG00000032037 bet1l / Q68EL3 / Bet1 golgi vesicular membrane trafficking protein-like / Q9NYM9* / O35153* / Gm45785* / BET1-like protein *  / complex
 ENSDARG00000038991 nsfb / N-ethylmaleimide-sensitive factor b / NSF* / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / complex / reaction
 ENSDARG00000007654 nsfa / N-ethylmaleimide-sensitive factor a / NSF* / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / complex / reaction
 ENSDARG00000026654 gosr1 / golgi SNAP receptor complex member 1 / O88630* / O95249*  / complex
 ENSDARG00000103516 sec24c / SEC24 homolog C, COPII coat complex component / P53992* / Sec24 related gene family, member C (S. cerevisiae)*  / complex / reaction
 ENSDARG00000100435 Q7SXP0 / sec22bb / SEC22 homolog B, vesicle trafficking protein b / SEC22B* / O08547* / O75396* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/p...  / complex / reaction
 ENSDARG00000104230 Q7SZE5 / sec23a / Sec23 homolog A, COPII coat complex component / Q15436* / Q01405* / Protein transport protein Sec23A * / Sec23 homolog A, coat complex II component*  / complex / reaction
 ENSDARG00000053070 gosr2 / golgi SNAP receptor complex member 2 / O14653* / O35166* / AC005670.2*  / complex
 ENSDARG00000063197 golga2 / golgin A2 / A6NMD2* / A7E2F4* / A8MQT2* / A8MZA4* / D6RF30* / F8WBI6* / A6NCC3* / A6NDK9* / A6NDN3* / H3BSY2* / I6L899* / P0CG33* / P0CJ92* / Q08379* / Q08AF8* / Q8N9W4* / Q921M4* ...  / reaction






 

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