ENSDARG00000003680


Danio rerio

Features
Gene ID: ENSDARG00000003680
  
Biological name :runx1t1
  
Synonyms : runt-related transcription factor 1; translocated to, 1 (cyclin D-related) / runx1t1
  
Possible biological names infered from orthology : Q06455 / Q61909 / RUNX1 translocation partner 1
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 33553586
Gene end: 33785914
  
Corresponding Affymetrix probe sets: Dr.11076.1.A1_at (Zebrafish Array)   Dr.19507.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000125745
Ensembl peptide - ENSDARP00000145982
Ensembl peptide - ENSDARP00000139489
Ensembl peptide - ENSDARP00000020377
Ensembl peptide - ENSDARP00000104786
Ensembl peptide - ENSDARP00000123046
Ensembl peptide - ENSDARP00000125675
NCBI entrez gene - 767809     See in Manteia.
swissprot - E9QDS4
swissprot - A0A0R4IXV4
swissprot - I3IS12
swissprot - I3IS78
swissprot - Q08BX1
swissprot - Q1L8K2
ZFIN ID - ZDB-GENE-060929-164
Ensembl - ENSDARG00000003680
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RUNX1T1ENSGALG00000033091Gallus gallus
 Q06455ENSG00000079102Homo sapiens
 Q61909ENSMUSG00000006586Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cbfa2t3 / core-binding factor, runt domain, alpha subunit 2; translocated to, 3 / O75081* / CBFA2/RUNX1 translocation partner 3*ENSDARG0000007901272
cbfa2t2 / core-binding factor, runt domain, alpha subunit 2; translocated to, 2 / O70374* / O43439* / CBFA2/RUNX1 translocation partner 2* / core-binding factor, runt domain, alpha subunit ...ENSDARG0000007433760
deaf1 / DEAF1 transcription factor / O75398* / Q9Z1T5* / Deformed epidermal autoregulatory factor 1 homolog *ENSDARG0000008884414


Protein motifs (from Interpro)
Interpro ID Name
 IPR002893  Zinc finger, MYND-type
 IPR003894  TAFH/NHR1
 IPR013289  CBFA2T family
 IPR013290  Protein CBFA2T1
 IPR014896  NHR2-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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