ENSDARG00000088844


Danio rerio

Features
Gene ID: ENSDARG00000088844
  
Biological name :deaf1
  
Synonyms : deaf1 / DEAF1 transcription factor
  
Possible biological names infered from orthology : Deformed epidermal autoregulatory factor 1 homolog / O75398 / Q9Z1T5
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 4660639
Gene end: 4690184
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000107236
NCBI entrez gene - 563776     See in Manteia.
RefSeq - XM_005174255
RefSeq Peptide - NP_001124251
swissprot - B3DHN2
ZFIN ID - ZDB-GENE-081022-163
Ensembl - ENSDARG00000088844
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DEAF1ENSGALG00000034225Gallus gallus
 DEAF1ENSG00000177030Homo sapiens
 Deaf1ENSMUSG00000058886Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cbfa2t3 / core-binding factor, runt domain, alpha subunit 2; translocated to, 3 / O75081* / CBFA2/RUNX1 translocation partner 3*ENSDARG0000007901216
runx1t1 / runt-related transcription factor 1; translocated to, 1 (cyclin D-related) / Q06455* / Q61909* / RUNX1 translocation partner 1*ENSDARG0000000368015
cbfa2t2 / core-binding factor, runt domain, alpha subunit 2; translocated to, 2 / O70374* / O43439* / CBFA2/RUNX1 translocation partner 2* / core-binding factor, runt domain, alpha subunit ...ENSDARG0000007433714


Protein motifs (from Interpro)
Interpro ID Name
 IPR000770  SAND domain
 IPR002893  Zinc finger, MYND-type
 IPR010919  SAND-like domain superfamily
 IPR024119  Transcription factor DEAF-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:2000026 regulation of multicellular organismal development IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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