ENSDARG00000004712


Danio rerio

Features
Gene ID: ENSDARG00000004712
  
Biological name :tbr1b
  
Synonyms : T-box, brain, 1b / tbr1b
  
Possible biological names infered from orthology : Q16650 / Q64336 / T-box, brain 1 / T-box brain protein 1 / TBR1
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 51427826
Gene end: 51436377
  
Corresponding Affymetrix probe sets: Dr.10723.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000019930
NCBI entrez gene - 58042     See in Manteia.
swissprot - B5DE34
ZFIN ID - ZDB-GENE-000323-1
Ensembl - ENSDARG00000004712
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TBR1ENSGALG00000036378Gallus gallus
 TBR1ENSG00000136535Homo sapiens
 Tbr1ENSMUSG00000035033Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
eomesa / eomesodermin homolog a / EOMES* / O95936* / eomesodermin*ENSDARG0000000664046
tbr1a / T-box, brain, 1aENSDARG0000007625944
eomesb / eomesodermin homolog b / EOMES* / O95936* / eomesodermin*ENSDARG0000010424341
tbx21 / T-box 21 / Q9JKD8* / Q9UL17* / T-box transcription factor TBX21 *ENSDARG0000000447338
mgaa / MGA, MAX dimerization protein a / MGA* / Q8IWI9* / A2AWL7* / MAX-associated protein * / MGA, MAX dimerization protein*ENSDARG0000007878419
tbxtb / T-box transcription factor Tb / T* / TBXT* / P20293* / O15178* / T-box transcription factor T* / brachyury, T-box transcription factor T*ENSDARG0000003980618
tbx19 / T-box 19 / O60806* / Q99ME7* / T-box transcription factor TBX19 *ENSDARG0000007918718
tbxta / Q07998 / T-box transcription factor TaENSDARG0000010157617
tbx6l / T-box 6, likeENSDARG0000000693915


Protein motifs (from Interpro)
Interpro ID Name
 IPR001699  Transcription factor, T-box
 IPR008967  p53-like transcription factor, DNA-binding
 IPR018186  Transcription factor, T-box, conserved site
 IPR032385  T-box transcription factor-associated


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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