ENSDARG00000004724


Danio rerio

Features
Gene ID: ENSDARG00000004724
  
Biological name :tcea3
  
Synonyms : tcea3 / transcription elongation factor A (SII), 3
  
Possible biological names infered from orthology : O75764 / P23881 / transcription elongation factor A3 / Transcription elongation factor A protein 3
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 34111919
Gene end: 34135244
  
Corresponding Affymetrix probe sets: Dr.15634.1.S1_at (Zebrafish Array)   NM_205683_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000013575
Ensembl peptide - ENSDARP00000121141
Ensembl peptide - ENSDARP00000118795
NCBI entrez gene - 402983     See in Manteia.
RefSeq - NM_205683
RefSeq Peptide - NP_991246
swissprot - E9QI11
swissprot - E9QED3
swissprot - Q6P0U5
ZFIN ID - ZDB-GENE-040426-1860
Ensembl - ENSDARG00000004724
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TCEA3ENSG00000204219Homo sapiens
 Tcea3ENSMUSG00000001604Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tcea2 / transcription elongation factor A (SII), 2 / Q15560* / Q9QVN7* / transcription elongation factor A2*ENSDARG0000001292746
tcea1 / transcription elongation factor A (SII), 1 / P23193* / P10711* / transcription elongation factor A1* / Transcription elongation factor A protein 1 *ENSDARG0000000353144
BX276105.3 / Q8N8B7* / TCEANC* / transcription elongation factor A N-terminal and central domain containing*ENSDARG0000011585614


Protein motifs (from Interpro)
Interpro ID Name
 IPR001222  Zinc finger, TFIIS-type
 IPR003617  Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
 IPR003618  Transcription elongation factor S-II, central domain
 IPR006289  Transcription elongation factor, TFIIS
 IPR017923  Transcription factor IIS, N-terminal
 IPR035100  Transcription elongation factor, IIS-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006414 translational elongation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003746 translation elongation factor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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