ENSDARG00000012927


Danio rerio

Features
Gene ID: ENSDARG00000012927
  
Biological name :tcea2
  
Synonyms : tcea2 / transcription elongation factor A (SII), 2
  
Possible biological names infered from orthology : Q15560 / Q9QVN7 / transcription elongation factor A2
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 8718950
Gene end: 8733092
  
Corresponding Affymetrix probe sets: Dr.15437.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000002994
NCBI entrez gene - 393961     See in Manteia.
RefSeq - NM_200986
RefSeq Peptide - NP_957280
swissprot - F1QTS2
ZFIN ID - ZDB-GENE-040426-985
Ensembl - ENSDARG00000012927
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TCEA2ENSGALG00000005976Gallus gallus
 TCEA2ENSG00000171703Homo sapiens
 Tcea2ENSMUSG00000059540Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tcea1 / transcription elongation factor A (SII), 1 / P23193* / P10711* / transcription elongation factor A1* / Transcription elongation factor A protein 1 *ENSDARG0000000353165
tcea3 / transcription elongation factor A (SII), 3 / P23881* / O75764* / transcription elongation factor A3* / Transcription elongation factor A protein 3 *ENSDARG0000000472463
BX276105.3 / Q8N8B7* / TCEANC* / transcription elongation factor A N-terminal and central domain containing*ENSDARG0000011585619


Protein motifs (from Interpro)
Interpro ID Name
 IPR001222  Zinc finger, TFIIS-type
 IPR003617  Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
 IPR003618  Transcription elongation factor S-II, central domain
 IPR006289  Transcription elongation factor, TFIIS
 IPR017923  Transcription factor IIS, N-terminal
 IPR035100  Transcription elongation factor, IIS-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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