ENSMUSG00000059540


Mus musculus

Features
Gene ID: ENSMUSG00000059540
  
Biological name :Tcea2
  
Synonyms : Q9QVN7 / Tcea2 / transcription elongation factor A (SII), 2
  
Possible biological names infered from orthology : Q15560 / transcription elongation factor A2
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: H4
Gene start: 181680310
Gene end: 181688071
  
Corresponding Affymetrix probe sets: 10479672 (MoGene1.0st)   1418107_at (Mouse Genome 430 2.0 Array)   1440791_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000120083
Ensembl peptide - ENSMUSP00000099331
Ensembl peptide - ENSMUSP00000119646
NCBI entrez gene - 21400     See in Manteia.
MGI - MGI:107368
RefSeq - NM_009326
RefSeq - XM_006500586
RefSeq - XM_006500587
RefSeq Peptide - NP_033352
swissprot - Q810R3
swissprot - B7ZCS4
swissprot - F6XMY4
swissprot - Q9QVN7
Ensembl - ENSMUSG00000059540
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tcea2ENSDARG00000012927Danio rerio
 TCEA2ENSGALG00000005976Gallus gallus
 TCEA2ENSG00000171703Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Tcea1 / P10711 / Transcription elongation factor A protein 1 / P23193* / transcription elongation factor A1*ENSMUSG0000003381362
Tcea3 / P23881 / Transcription elongation factor A protein 3 / O75764* / transcription elongation factor A3*ENSMUSG0000000160457
Q3US16 / Tceanc / Transcription elongation factor A N-terminal and central domain-containing protein / Q8N8B7* / transcription elongation factor A N-terminal and central domain containing*ENSMUSG0000005122429


Protein motifs (from Interpro)
Interpro ID Name
 IPR001222  Zinc finger, TFIIS-type
 IPR003617  Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
 IPR003618  Transcription elongation factor S-II, central domain
 IPR006289  Transcription elongation factor, TFIIS
 IPR017923  Transcription factor IIS, N-terminal
 IPR035100  Transcription elongation factor, IIS-type
 IPR035441  TFIIS/LEDGF domain superfamily
 IPR036575  Transcription elongation factor S-II, central domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006414 translational elongation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003746 translation elongation factor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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