ENSGALG00000005976


Gallus gallus

Features
Gene ID: ENSGALG00000005976
  
Biological name :TCEA2
  
Synonyms : TCEA2 / transcription elongation factor A2
  
Possible biological names infered from orthology : Q15560 / Q9QVN7 / transcription elongation factor A (SII), 2
  
Species: Gallus gallus
  
Chr. number: 20
Strand: -1
Band:
Gene start: 9551832
Gene end: 9568102
  
Corresponding Affymetrix probe sets: Gga.5407.1.S1_at (Chicken Array)   Gga.5407.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009594
Ensembl peptide - ENSGALP00000061515
Ensembl peptide - ENSGALP00000061481
Ensembl peptide - ENSGALP00000060255
Ensembl peptide - ENSGALP00000060022
Ensembl peptide - ENSGALP00000049511
NCBI entrez gene - 419253     See in Manteia.
RefSeq - XM_417425
RefSeq - XM_004947109
RefSeq - XM_015296616
RefSeq - XM_015296617
RefSeq - XM_015296618
RefSeq - XM_015296619
RefSeq - XM_015296620
swissprot - A0A1L1RRP6
swissprot - A0A1L1RNA8
swissprot - A0A1L1RMK7
swissprot - A0A1D5P9V3
swissprot - F1NBF9
swissprot - A0A1L1RRT1
Ensembl - ENSGALG00000005976
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tcea2ENSDARG00000012927Danio rerio
 TCEA2ENSG00000171703Homo sapiens
 Tcea2ENSMUSG00000059540Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TCEA1 / transcription elongation factor A1 / P10711* / P23193* / Transcription elongation factor A protein 1 *ENSGALG0000001527469
TCEANC / transcription elongation factor A N-terminal and central domain containing / Q3US16* / Q8N8B7* / Transcription elongation factor A N-terminal and central domain-containing protein *ENSGALG0000001658130


Protein motifs (from Interpro)
Interpro ID Name
 IPR001222  Zinc finger, TFIIS-type
 IPR003617  Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
 IPR003618  Transcription elongation factor S-II, central domain
 IPR006289  Transcription elongation factor, TFIIS
 IPR017923  Transcription factor IIS, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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