ENSG00000171703


Homo sapiens

Features
Gene ID: ENSG00000171703
  
Biological name :TCEA2
  
Synonyms : Q15560 / TCEA2 / transcription elongation factor A2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: q13.33
Gene start: 64049836
Gene end: 64072347
  
Corresponding Affymetrix probe sets: 203919_at (Human Genome U133 Plus 2.0 Array)   238173_at (Human Genome U133 Plus 2.0 Array)   241428_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000407085
Ensembl peptide - ENSP00000391807
Ensembl peptide - ENSP00000416026
Ensembl peptide - ENSP00000339432
Ensembl peptide - ENSP00000343515
Ensembl peptide - ENSP00000354552
Ensembl peptide - ENSP00000378493
NCBI entrez gene - 6919     See in Manteia.
OMIM - 604784
RefSeq - XM_017028037
RefSeq - NM_003195
RefSeq - NM_198723
RefSeq - XM_005260229
RefSeq - XM_011529022
RefSeq - XM_011529023
RefSeq - XM_011529027
RefSeq - XM_017028036
RefSeq Peptide - NP_942016
RefSeq Peptide - NP_003186
swissprot - A0A0A0MT58
swissprot - Q15560
swissprot - Q5JRI7
swissprot - Q6IB64
swissprot - Q5JRI8
swissprot - Q86VL0
Ensembl - ENSG00000171703
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tcea2ENSDARG00000012927Danio rerio
 TCEA2ENSGALG00000005976Gallus gallus
 Tcea2ENSMUSG00000059540Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TCEA1 / P23193 / transcription elongation factor A1ENSG0000018773567
TCEA3 / O75764 / transcription elongation factor A3ENSG0000020421957
Q8N8B7 / TCEANC / transcription elongation factor A N-terminal and central domain containingENSG0000017689629


Protein motifs (from Interpro)
Interpro ID Name
 IPR001222  Zinc finger, TFIIS-type
 IPR003617  Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
 IPR003618  Transcription elongation factor S-II, central domain
 IPR006289  Transcription elongation factor, TFIIS
 IPR017923  Transcription factor IIS, N-terminal
 IPR035100  Transcription elongation factor, IIS-type
 IPR035441  TFIIS/LEDGF domain superfamily
 IPR036575  Transcription elongation factor S-II, central domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006354 DNA-templated transcription, elongation NAS
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006414 translational elongation IEA
 biological_processGO:0032784 regulation of DNA-templated transcription, elongation NAS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0008023 transcription elongation factor complex NAS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003746 translation elongation factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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