ENSDARG00000006603


Danio rerio

Features
Gene ID: ENSDARG00000006603
  
Biological name :csrp1a
  
Synonyms : csrp1a / cysteine and glycine-rich protein 1a
  
Possible biological names infered from orthology : CSRP1 / cysteine and glycine rich protein 1 / P21291 / P97315
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 5765514
Gene end: 5818992
  
Corresponding Affymetrix probe sets: Dr.15857.1.A1_at (Zebrafish Array)   Dr.15857.2.S1_at (Zebrafish Array)   NM_205567_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000124015
Ensembl peptide - ENSDARP00000125029
Ensembl peptide - ENSDARP00000002532
NCBI entrez gene - 378726     See in Manteia.
RefSeq - NM_205567
RefSeq Peptide - NP_991130
swissprot - F8W5N8
swissprot - F8W3V9
swissprot - Q6NZV4
ZFIN ID - ZDB-GENE-030909-4
Ensembl - ENSDARG00000006603
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CSRP1ENSGALG00000000318Gallus gallus
 CSRP1ENSG00000159176Homo sapiens
 Csrp1ENSMUSG00000026421Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
csrp1b / cysteine and glycine-rich protein 1b / CSRP1* / P21291* / cysteine and glycine rich protein 1*ENSDARG0000003098083
csrp2 / cysteine and glycine-rich protein 2 / P97314* / Q16527*ENSDARG0000001196174
csrp3 / cysteine and glycine-rich protein 3 (cardiac LIM protein) / P50461* / P50462* / cysteine and glycine rich protein 3*ENSDARG0000010170667
zgc:101840 / CRIP2* / P52943* / Q9DCT8* / cysteine rich protein 2*ENSDARG0000003320141
crip2 / cysteine-rich protein 2 / P52943* / Q9DCT8*ENSDARG0000007067041
crip3 / cysteine-rich protein 3ENSDARG0000004339539
crip1 / cysteine-rich protein 1 / P50238* / P63254* / AL928654.3*ENSDARG0000005385818
zgc:195282 / CRIP3* / Q6Q6R3* / Q6Q6R5* / cysteine rich protein 3*ENSDARG0000007948811


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003007 heart morphogenesis IMP
 biological_processGO:0007254 JNK cascade IMP
 biological_processGO:0016055 Wnt signaling pathway IMP
 biological_processGO:0031102 neuron projection regeneration IMP
 biological_processGO:0042074 cell migration involved in gastrulation IMP
 biological_processGO:0060027 convergent extension involved in gastrulation IMP
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000028 heart primordium heart primordium morphology , abnormal
Show

 ZFA:0000114 heart heart split , abnormal
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 ZFA:0000135 notochord notochord increased width , abnormal
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 ZFA:0000155 somite somite condensed , abnormal
somite decreased length , abnormal
somite increased width , abnormal
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 ZFA:0000219 intermediate reticular formation intermediate reticular formation neuron projection regeneration decreased process quality , abnormal
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 ZFA:0000543 medial longitudinal fasciculus medial longitudinal fasciculus neuron projection regeneration decreased process quality , abnormal
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 ZFA:0000593 superior reticular formation medial column superior reticular formation medial column neuron projection regeneration decreased process quality , abnormal
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 ZFA:0000984 superior reticular formation tegmentum superior reticular formation tegmentum neuron projection regeneration decreased process quality , abnormal
Show

 ZFA:0001115 trunk trunk decreased length , abnormal
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 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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