ENSDARG00000011023


Danio rerio

Features
Gene ID: ENSDARG00000011023
  
Biological name :pdlim3a
  
Synonyms : pdlim3a / PDZ and LIM domain 3a
  
Possible biological names infered from orthology : O70209 / PDLIM3 / PDZ and LIM domain 3 / PDZ and LIM domain protein 3 / Q53GG5
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 17721853
Gene end: 17735861
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000006482
NCBI entrez gene - 554148     See in Manteia.
RefSeq - NM_001024376
RefSeq Peptide - NP_001019547
swissprot - B8JIG6
ZFIN ID - ZDB-GENE-050505-1
Ensembl - ENSDARG00000011023
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDLIM3ENSGALG00000013414Gallus gallus
 PDLIM3ENSG00000154553Homo sapiens
 O70209ENSMUSG00000031636Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pdlim3b / PDZ and LIM domain 3b / Q53GG5* / O70209* / PDLIM3* / PDZ and LIM domain 3* / PDZ and LIM domain protein 3 *ENSDARG0000001424865
pdlim1 / PDZ and LIM domain 1 (elfin) / O70400* / O00151* / PDZ and LIM domain 1* / PDZ and LIM domain protein 1 *ENSDARG0000001984548
pdlim4 / PDZ and LIM domain 4 / P50479*ENSDARG0000006897344
pdlim2 / PDZ and LIM domain 2 (mystique) / Q8R1G6* / Q96JY6* / PDZ and LIM domain 2* / PDZ and LIM domain protein 2 *ENSDARG0000006995634


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001781  Zinc finger, LIM-type
 IPR006643  Zasp-like motif
 IPR031847  Domain of unknown function DUF4749


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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