ENSG00000154553


Homo sapiens

Features
Gene ID: ENSG00000154553
  
Biological name :PDLIM3
  
Synonyms : PDLIM3 / PDZ and LIM domain 3 / Q53GG5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: q35.1
Gene start: 185500660
Gene end: 185535612
  
Corresponding Affymetrix probe sets: 209621_s_at (Human Genome U133 Plus 2.0 Array)   210170_at (Human Genome U133 Plus 2.0 Array)   240289_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000421972
Ensembl peptide - ENSP00000495411
Ensembl peptide - ENSP00000486107
Ensembl peptide - ENSP00000481771
Ensembl peptide - ENSP00000425138
Ensembl peptide - ENSP00000284767
Ensembl peptide - ENSP00000284770
Ensembl peptide - ENSP00000284771
NCBI entrez gene - 27295     See in Manteia.
OMIM - 605889
RefSeq - NM_001257962
RefSeq - NM_001257963
RefSeq - NM_014476
RefSeq - NM_001114107
RefSeq Peptide - NP_001107579
RefSeq Peptide - NP_001244892
RefSeq Peptide - NP_055291
RefSeq Peptide - NP_001244891
swissprot - Q53GG5
swissprot - A0A0A0MQY0
swissprot - A0A087WYF8
swissprot - D6RAF1
Ensembl - ENSG00000154553
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pdlim3aENSDARG00000011023Danio rerio
 pdlim3bENSDARG00000014248Danio rerio
 PDLIM3ENSGALG00000013414Gallus gallus
 O70209ENSMUSG00000031636Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O00151 / PDLIM1 / PDZ and LIM domain 1ENSG0000010743845
P50479 / PDLIM4 / PDZ and LIM domain 4ENSG0000013143540
PDLIM2 / Q96JY6 / PDZ and LIM domain 2ENSG0000012091327


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001781  Zinc finger, LIM-type
 IPR006643  Zasp-like motif
 IPR031847  Domain of unknown function DUF4749
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007015 actin filament organization IEA
 biological_processGO:0007507 heart development IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 cellular_componentGO:0030018 Z disc IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008092 cytoskeletal protein binding IEA
 molecular_functionGO:0008307 structural constituent of muscle IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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