ENSDARG00000012572


Danio rerio

Features
Gene ID: ENSDARG00000012572
  
Biological name :polr3f
  
Synonyms : polr3f / polymerase (RNA) III (DNA directed) polypeptide F
  
Possible biological names infered from orthology : Q921X6 / Q9H1D9 / RNA polymerase III subunit F
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 25034740
Gene end: 25043103
  
Corresponding Affymetrix probe sets: Dr.24983.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000004882
swissprot - Q6NYQ9
ZFIN ID - ZDB-GENE-040426-972
Ensembl - ENSDARG00000012572
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLR3FENSGALG00000008749Gallus gallus
 POLR3FENSG00000132664Homo sapiens
 Polr3fENSMUSG00000027427Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007832  RNA polymerase Rpc34
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 biological_processGO:0060041 retina development in camera-type eye IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005666 DNA-directed RNA polymerase III complex IEA
 molecular_functionGO:0001056 RNA polymerase III activity IBA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
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 ZFA:0000152 retina retina quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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