ENSDARG00000012968


Danio rerio

Features
Gene ID: ENSDARG00000012968
  
Biological name :rhoub
  
Synonyms : ras homolog family member Ub / rhoub
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 8990577
Gene end: 9002155
  
Corresponding Affymetrix probe sets: Dr.18103.1.S1_at (Zebrafish Array)   Dr.21080.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000104615
NCBI entrez gene - 550481     See in Manteia.
RefSeq - NM_001017784
RefSeq Peptide - NP_001017784
swissprot - F1QM54
ZFIN ID - ZDB-GENE-050417-308
Ensembl - ENSDARG00000012968
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rhoua / ras homolog family member Ua / RHOU* / Q9EQT3* / Q7L0Q8* / ras homolog family member U* / Rho-related GTP-binding protein RhoU *ENSDARG0000001970965
RHOU (1 of many) / si:ch211-133l11.10 / RHOU* / Q9EQT3* / Q7L0Q8* / ras homolog family member U* / Rho-related GTP-binding protein RhoU *ENSDARG0000000562657
rhov / ras homolog family member V / Q8VDU1* / Q96L33* / Rho-related GTP-binding protein RhoV *ENSDARG0000007043453
cdc42 / cell division cycle 42 / P60766* / P60953* / Cell division control *ENSDARG0000004457343
rac3b / Rac family small GTPase 3b / RAC3* / P60764* / P60763* / Rac family small GTPase 3* / RAS-related C3 botulinum substrate 3*ENSDARG0000002079541
rac2 / Rac family small GTPase 2 / P15153* / Q05144* / Ras-related C3 botulinum toxin substrate 2 *ENSDARG0000003801041
cdc42l / cell division cycle 42, likeENSDARG0000004015841
rac1a / Rac family small GTPase 1a / RAC1* / P63001* / P63000* / Rac family small GTPase 1* / RAS-related C3 botulinum substrate 1*ENSDARG0000007484941
rac1b / Rac family small GTPase 1b / RAC1* / P63001* / P63000* / Rac family small GTPase 1* / RAS-related C3 botulinum substrate 1*ENSDARG0000008795441
rac3a / Rac family small GTPase 3a / RAC3* / P60763* / Rac family small GTPase 3*ENSDARG0000009006241
rhoq / ras homolog family member Q / P17081* / Q8R527* / Rho-related GTP-binding protein RhoQ *ENSDARG0000002595340
rhoj / ras homolog family member J / Q9ER71* / Q9H4E5*ENSDARG0000002025039
cdc42l2 / cell division cycle 42 like 2ENSDARG0000005786938
rhogb / ras homolog family member Gb / RHOG* / P84095* / P84096* / ras homolog family member G*ENSDARG0000000430137
rhogc / ras homolog gene family, member GcENSDARG0000002840137
rhoga / ras homolog family member Ga / RHOG* / P84095* / P84096* / ras homolog family member G*ENSDARG0000006865337
si:ch211-1f22.1 / RAC1* / P63001* / P63000* / Rac family small GTPase 1* / RAS-related C3 botulinum substrate 1*ENSDARG0000001320336
rac1l / Rac family small GTPase 1, like / RAC1* / P63001* / P63000* / Rac family small GTPase 1* / RAS-related C3 botulinum substrate 1*ENSDARG0000005464936
rhogd / ras homolog gene family, member GdENSDARG0000003060835
si:dkey-263f15.2ENSDARG0000007482834


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR003578  Small GTPase superfamily, Rho type
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007264 small GTPase mediated signal transduction IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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