ENSDARG00000013853


Danio rerio

Features
Gene ID: ENSDARG00000013853
  
Biological name :lmo4a
  
Synonyms : LIM domain only 4a / lmo4a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 32924669
Gene end: 32962023
  
Corresponding Affymetrix probe sets: Dr.6295.1.S1_at (Zebrafish Array)   NM_177984_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000079654
Ensembl peptide - ENSDARP00000147813
NCBI entrez gene - 114412     See in Manteia.
RefSeq - NM_177984
RefSeq Peptide - NP_817093
swissprot - Q8QG63
ZFIN ID - ZDB-GENE-010702-1
Ensembl - ENSDARG00000013853
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-90l8.3ENSDARG0000010367681
lmo4b / LIM domain only 4b / LMO4* / P61968* / P61969* / LIM domain only 4* / LIM domain transcription factor LMO4 *ENSDARG0000005474974
zgc:56628ENSDARG0000011002060
lmo1 / Q8JFQ2 / LIM domain only 1ENSDARG0000003450442
lmo3 / Q503U0 / LIM domain only 3 / Q8TAP4* / Q8BZL8* / Mus musculus LIM domain only 3 (Lmo3), transcript variant 2, mRNA.*ENSDARG0000000872041
lhx2b / LIM homeobox 2bENSDARG0000003122239
lhx9 / Q1LWV4 / LIM homeobox 9 / Q9WUH2* / Q9NQ69* / LIM/homeobox protein Lhx9 *ENSDARG0000005697939
lhx2a / LIM homeobox 2aENSDARG0000003796437
lmx1ba / LIM homeobox transcription factor 1, beta a / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000010481537
LHX3 / LIM homeobox 3 / Q9UBR4*ENSDARG0000000380335
isl2a / P53406 / ISL LIM homeobox 2a / ISL2* / Q96A47* / ISL LIM homeobox 2*ENSDARG0000000397135
lmx1bb / LIM homeobox transcription factor 1, beta b / LMX1B* / O60663* / LIM homeobox transcription factor 1 beta*ENSDARG0000006836535
lmx1al / LIM homeobox transcription factor 1, alpha-likeENSDARG0000007791535
lmo2 / Q9PTJ3 / LIM domain only 2 (rhombotin-like 1) / P25791* / P25801* / Rhombotin-2 * / LIM domain only 2*ENSDARG0000009501935
lhx4 / LIM homeobox 4 / P53776* / Q969G2* / LIM/homeobox protein Lhx4 *ENSDARG0000003945834
isl2b / P53407 / ISL LIM homeobox 2b / ISL2* / Q9CXV0* / Q96A47* / ISL LIM homeobox 2* / Insulin enhancer protein ISL-2 *ENSDARG0000005349934
isl1 / P53405 / ISL LIM homeobox 1 / P61371* / P61372* / Insulin enhancer protein ISL-1 *ENSDARG0000000402333
lmx1a / LIM homeobox transcription factor 1, alpha / Q8TE12* / Q9JKU8*ENSDARG0000002035433
lhx6 / LIM homeobox 6 / Q9R1R0* / Q9UPM6* / Mus musculus LIM homeobox protein 6 (Lhx6), transcript variant 5, mRNA.*ENSDARG0000000689632
lhx1b / LIM homeobox 1b / LHX1* / P48742* / P63006* / LIM homeobox 1* / LIM/homeobox protein Lhx1 *ENSDARG0000000794432


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030900 forebrain development IMP
 biological_processGO:0031076 embryonic camera-type eye development IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
Show

 ZFA:0000032 hypothalamus hypothalamus increased size , abnormal
Show

 ZFA:0000050 optic vesicle optic vesicle has extra parts of type neurectodermal cell , abnormal
optic vesicle increased size , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle morphology , abnormal
Show

 ZFA:0000079 telencephalon telencephalon increased length , abnormal
Show

 ZFA:0000101 diencephalon diencephalon increased length , abnormal
diencephalon increased size , abnormal
Show

 ZFA:0000107 eye eye increased size , abnormal
Show

 ZFA:0000132 neural plate neural plate increased size , abnormal
Show

 ZFA:0000137 optic stalk optic stalk increased size , abnormal
Show

 ZFA:0000152 retina retina increased size , abnormal
Show

 ZFA:0001114 head head morphology , abnormal
head increased size , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin morphology , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr