ENSDARG00000016936


Danio rerio

Features
Gene ID: ENSDARG00000016936
  
Biological name :hmcn1
  
Synonyms : hemicentin 1 / hmcn1
  
Possible biological names infered from orthology : D3YXG0 / Q96RW7
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 34157308
Gene end: 34292607
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000119972
Ensembl peptide - ENSDARP00000127329
Ensembl peptide - ENSDARP00000005919
NCBI entrez gene - 559150     See in Manteia.
RefSeq - NM_001190304
RefSeq Peptide - NP_001177233
swissprot - F1R7R3
swissprot - F1QVQ2
swissprot - U3JAR0
ZFIN ID - ZDB-GENE-041014-322
Ensembl - ENSDARG00000016936
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMCN1ENSGALG00000031129Gallus gallus
 HMCN1ENSG00000143341Homo sapiens
 Hmcn1ENSMUSG00000066842Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hmcn2 / hemicentin 2 / A2AJ76* / Q8NDA2*ENSDARG0000007932734
ttn.1 / titin, tandem duplicate 1 / TTN* / titin* / A2ASS6* / Q8WZ42*ENSDARG0000000056317
ttn.2 / titin, tandem duplicate 2 / TTN* / titin* / A2ASS6* / Q8WZ42*ENSDARG0000002821315
mxra5a / matrix-remodelling associated 5a / MXRA5* / Q9NR99* / matrix remodeling associated 5*ENSDARG000000748158
mxra5b / matrix-remodelling associated 5b / MXRA5* / Q9NR99* / matrix remodeling associated 5*ENSDARG000000763098
igsf10 / immunoglobulin superfamily, member 10 / Q3V1M1* / Q6WRI0*ENSDARG000000774978
obsl1a / obscurin-like 1a / OBSL1* / O75147* / obscurin like 1*ENSDARG000000036847
si:ch211-159i8.4ENSDARG000000763327
obsl1b / obscurin-like 1b / OBSL1* / D3YYU8* / O75147* / obscurin like 1* / Obscurin-like protein 1 *ENSDARG000000773887
hmcn2 / hemicentin 2ENSDARG000000860607
obscnb / obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF b / OBSCN* / Q5VST9* / obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF*ENSDARG000000221015
palld / palladin, cytoskeletal associated protein / Q8WX93* / Q9ET54* / Palladin *ENSDARG000000400093
CU928131.1ENSDARG000001092623
myot / myotilinENSDARG000000763121


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR000884  Thrombospondin type-1 (TSP1) repeat
 IPR001881  EGF-like calcium-binding domain
 IPR002035  von Willebrand factor, type A
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR006605  G2 nidogen/fibulin G2F
 IPR007110  Immunoglobulin-like domain
 IPR009017  Green fluorescent protein
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR013098  Immunoglobulin I-set
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR018097  EGF-like calcium-binding, conserved site
 IPR026823  Complement Clr-like EGF domain
 IPR032984  Hemicentin-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0033333 fin development IMP
 biological_processGO:0033334 fin morphogenesis IMP
 biological_processGO:0071711 basement membrane organization IMP
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000040 median fin fold median fin fold edematous , abnormal
median fin fold degenerate , abnormal
median fin fold blistered , abnormal
Show

 ZFA:0000108 fin fin degenerate , abnormal
fin malformed , abnormal
fin necrotic , abnormal
Show

 ZFA:0000292 surface structure surface structure quality , abnormal
Show

 ZFA:0001058 caudal fin caudal fin has fewer parts of type lepidotrichium , abnormal
Show

 ZFA:0001069 ventral fin fold ventral fin fold epidermis morphology , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin has fewer parts of type lepidotrichium , abnormal
pectoral fin degenerate , abnormal
pectoral fin edematous , abnormal
Show

 ZFA:0001162 anal fin anal fin has fewer parts of type lepidotrichium , abnormal
Show

 ZFA:0001173 dorsal fin dorsal fin has fewer parts of type lepidotrichium , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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