ENSDARG00000017369
Danio rerio | |
Features
| Gene ID: | ENSDARG00000017369 | | | | | Biological name : | sema3d | | | | | Synonyms : | sema3d / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D | | | | | Possible biological names infered from orthology : | O95025 / Q8BH34 / semaphorin 3D | | | | | Species: | Danio rerio | | | | | Chr. number: | 18 | | Strand: | 1 | | Band: | | | Gene start: | 9171778 | | Gene end: | 9238675 | | | | | Corresponding Affymetrix probe sets: | Dr.8061.1.S1_at (Zebrafish Array) NM_131048_at (Zebrafish Genome Array with custom cdf files) | | | | | Cross references: | Ensembl peptide - ENSDARP00000091966
NCBI entrez gene - 30250
See in Manteia.
RefSeq - NM_131048
RefSeq Peptide - NP_571123
swissprot - E9QD84
ZFIN ID - ZDB-GENE-990715-2
Ensembl - ENSDARG00000017369
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See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
| sema3ab / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab / SEMA3A* / O08665* / Q14563* / semaphorin 3A* | ENSDARG00000042210 | 49 | | sema3b / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B / Q13214* / semaphorin 3B* | ENSDARG00000011672 | 48 | | sema3aa / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa / SEMA3A* / O08665* / Q14563* / semaphorin 3A* | ENSDARG00000019235 | 48 | | si:dkey-49n23.1 | ENSDARG00000040920 | 48 | | sema3bl / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl / Q9NS98* / Q4LFA9* / SEMA3G* / semaphorin 3G* | ENSDARG00000007560 | 45 | | sema3ga / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga | ENSDARG00000042545 | 43 | | sema3fb / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb / SEMA3F* / O88632* / Q13275* / semaphorin 3F* | ENSDARG00000055373 | 43 | | sema3fa / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa / SEMA3F* / O88632* / Q13275* / semaphorin 3F* | ENSDARG00000011163 | 42 | | sema3gb / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Gb | ENSDARG00000013607 | 42 | | sema3c / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C / Q62181* / Q99985* / semaphorin 3C* | ENSDARG00000034300 | 41 | | sema3e / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E / O15041* / P70275* / semaphorin 3E* | ENSDARG00000036571 | 41 | | sema3h / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H | ENSDARG00000042616 | 40 | | SEMA4D / semaphorin 4D / Q92854* | ENSDARG00000067801 | 29 | | sema4ga / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ga / SEMA4G* / Q9NTN9* / Q9WUH7* / semaphorin 4G* | ENSDARG00000076595 | 29 | | si:ch211-129c21.1 | ENSDARG00000024775 | 28 | | sema4e / semaphorin 4e | ENSDARG00000052997 | 27 | | sema4ba / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ba / Q62179* / SEMA4B* / semaphorin 4B* | ENSDARG00000074414 | 27 | | sema4bb / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Bb / Q62179* / SEMA4B* / semaphorin 4B* | ENSDARG00000076104 | 26 | | sema4c / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C / Q64151* / Q9C0C4* / semaphorin 4C* | ENSDARG00000079611 | 26 | | sema4gb / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Gb / SEMA4G* / Q9NTN9* / Q9WUH7* / semaphorin 4G* | ENSDARG00000088143 | 26 |
Protein motifs (from Interpro)
Gene Ontology (GO)
No match
Pathways (from Reactome)
No match
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000112 | gut | gut innervation disrupted , abnormal |
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| | ZFA:0000186 | common cardinal vein | common cardinal vein cell-cell junction spatial pattern , abnormal
common cardinal vein cell-cell junction irregular spatial pattern , abnormal
common cardinal vein cell-cell junction decreased length , abnormal
common cardinal vein increased width , abnormal
common cardinal vein blood vessel endothelial cell migration decreased process quality , abnormal
common cardinal vein decreased length , abnormal
common cardinal vein actin filament bundle disoriented , abnormal
common cardinal vein actin filament bundle organization decreased process quality , abnormal
common cardinal vein blood vessel endothelium patchy , abnormal
common cardinal vein blood vessel endothelial cell shape , abnormal
common cardinal vein blood vessel endothelial cell disorganized , abnormal
common cardinal vein blood vessel endothelial cell structure, cavities , abnormal |
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| | ZFA:0000213 | habenula | habenula axon misrouted , abnormal |
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| | ZFA:0000903 | interpeduncular nucleus tegmentum | interpeduncular nucleus tegmentum structure , abnormal |
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| | ZFA:0001157 | posterior lateral line primordium | posterior lateral line primordium malformed , abnormal |
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| | ZFA:0001269 | regenerating fin | regenerating fin lepidotrichium segment decreased length , abnormal
regenerating fin decreased length , abnormal
regenerating fin cell proliferation decreased occurrence , abnormal
regenerating fin decreased amount , abnormal |
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| | ZFA:0005775 | enteric neuron | enteric neuron decreased amount , abnormal |
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| | ZFA:0009150 | Rohon-Beard neuron | Rohon-Beard neuron axon decreased amount , abnormal |
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Interacting proteins (from Reactome)
No match
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