ENSDARG00000076104


Danio rerio
domainsema4bbmembranesemaplexinrepeatwdyvtnrepeat-like-containingsuperfamilypsisemaphorinchemotaxisextracellularspaceintegralcomponent

Features
Gene ID: ENSDARG00000076104
  
Biological name :sema4bb
  
Synonyms : sema4bb / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Bb
  
Possible biological names infered from orthology : Q62179 / SEMA4B / semaphorin 4B
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 30240791
Gene end: 30267169
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000101863
Ensembl peptide - ENSDARP00000142692
NCBI entrez gene - 561146     See in Manteia.
swissprot - A0A1D5NS82
swissprot - F1QU86
ZFIN ID - ZDB-GENE-120503-1
Ensembl - ENSDARG00000076104
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEMA4BENSGALG00000008297Gallus gallus
 SEMA4BENSG00000185033Homo sapiens
 Q62179ENSMUSG00000030539Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sema4ba / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ba / Q62179* / SEMA4B* / semaphorin 4B*ENSDARG0000007441458
sema4c / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C / Q64151* / Q9C0C4* / semaphorin 4C*ENSDARG0000007961132
sema4ab / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab / SEMA4A* / Q62178* / Q9H3S1* / semaphorin 4A*ENSDARG0000006235231
sema4ga / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ga / SEMA4G* / Q9NTN9* / Q9WUH7* / semaphorin 4G*ENSDARG0000007659531
SEMA4D / semaphorin 4D / Q92854*ENSDARG0000006780130
si:ch211-129c21.1ENSDARG0000002477529
sema4e / semaphorin 4eENSDARG0000005299728
sema3b / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B / Q13214* / semaphorin 3B*ENSDARG0000001167226
sema3aa / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa / SEMA3A* / O08665* / Q14563* / semaphorin 3A*ENSDARG0000001923526
si:dkey-49n23.1ENSDARG0000004092026
sema3ab / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab / SEMA3A* / O08665* / Q14563* / semaphorin 3A*ENSDARG0000004221026
SEMA4F / ssemaphorin 4F / O95754*ENSDARG0000010030826
sema3bl / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl / Q9NS98* / Q4LFA9* / SEMA3G* / semaphorin 3G*ENSDARG0000000756025
sema4gb / sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Gb / SEMA4G* / Q9NTN9* / Q9WUH7* / semaphorin 4G*ENSDARG0000008814325
sema3d / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D / O95025* / Q8BH34* / semaphorin 3D*ENSDARG0000001736924
sema3e / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E / O15041* / P70275* / semaphorin 3E*ENSDARG0000003657124
sema3fa / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa / SEMA3F* / O88632* / Q13275* / semaphorin 3F*ENSDARG0000001116323
sema3gb / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3GbENSDARG0000001360723
sema3ga / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3GaENSDARG0000004254523
sema3h / sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3HENSDARG0000004261623


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR002165  Plexin repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR027231  Semaphorin


Gene Ontology (GO)
response to external stimulusresponse to chemicalresponse to external stimulusresponse to chemicalresponse to external stimulusresponse to chemicalresponse to external stimulusresponse to chemicalresponse to external stimulusresponse to chemicalresponse to external stimulusresponse to chemicalresponse to external stimulusresponse to chemicalresponse to external stimulusresponse to chemicalresponse to external stimulusresponse to chemicalresponse to external stimulusresponse to chemicalresponse to external stimulusresponse to external stimulusresponse to chemicalresponse to chemical
extracellular regionmembraneextracellular regionmembraneextracellular regionmembraneextracellular regionmembraneextracellular regionmembraneextracellular regionmembraneextracellular regionmembraneextracellular regionmembraneextracellular regionmembraneextracellular regionmembraneextracellular regionextracellular regionmembranemembrane
TypeGO IDTermEv.Code
 biological_processGO:0050919 negative chemotaxis IBA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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