ENSDARG00000018559


Danio rerio

Features
Gene ID: ENSDARG00000018559
  
Biological name :kdm7ab
  
Synonyms : kdm7ab / lysine (K)-specific demethylase 7Ab
  
Possible biological names infered from orthology : KDM7A / lysine demethylase 7A / Lysine-specific demethylase 7A / Q3UWM4 / Q6ZMT4
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 17244532
Gene end: 17310301
  
Corresponding Affymetrix probe sets: Dr.17940.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000127924
Ensembl peptide - ENSDARP00000050378
Ensembl peptide - ENSDARP00000138449
NCBI entrez gene - 503902     See in Manteia.
RefSeq - NM_001202419
RefSeq - XM_005174322
RefSeq Peptide - NP_001189348
swissprot - F1QHF6
swissprot - A0A0R4IPR3
swissprot - X1WCI1
ZFIN ID - ZDB-GENE-050309-32
Ensembl - ENSDARG00000018559
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KDM7AENSGALG00000035108Gallus gallus
 KDM7AENSG00000006459Homo sapiens
 Kdm7aENSMUSG00000042599Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
phf8 / P0CH95 / PHD finger protein 8 / Q80TJ7* / Q9UPP1* / 4921501E09Rik* / RIKEN cDNA 4921501E09 gene* / Histone lysine demethylase PHF8 *ENSDARG0000000658437
phf2 / PHD finger protein 2 / O75151* / Q9WTU0* / Lysine-specific demethylase PHF2 *ENSDARG0000001869134
kdm2aa / lysine (K)-specific demethylase 2Aa / KDM2A* / Q9Y2K7* / lysine demethylase 2A*ENSDARG0000005965321
kdm2ab / lysine (K)-specific demethylase 2Ab / KDM2A* / Q9Y2K7* / lysine demethylase 2A*ENSDARG0000007813321
kdm2bb / lysine (K)-specific demethylase 2Bb / KDM2B* / Q6P1G2* / Q8NHM5* / lysine demethylase 2B* / Lysine-specific demethylase 2B *ENSDARG0000004601020
kdm7aa / Q5RHD1 / lysine (K)-specific demethylase 7Aa / PHF8* / Q80TJ7* / Q9UPP1* / 4921501E09Rik* / PHD finger protein 8* / RIKEN cDNA 4921501E09 gene* / Histone lysine demethylase PHF8 *ENSDARG0000001811114
kdm2ba / lysine (K)-specific demethylase 2BaENSDARG000000365935
btr30 / FBXL19 / zgc:158376 / Q6PCT2* / F-box and leucine rich repeat protein 19*ENSDARG000001033623


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR003347  JmjC domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000445 optic tectum optic tectum decreased size , abnormal
optic tectum neuron decreased amount , abnormal
Show

 ZFA:0001117 post-vent region post-vent region increased curvature , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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