ENSDARG00000078133


Danio rerio

Features
Gene ID: ENSDARG00000078133
  
Biological name :kdm2ab
  
Synonyms : kdm2ab / lysine (K)-specific demethylase 2Ab
  
Possible biological names infered from orthology : KDM2A / lysine demethylase 2A / Q9Y2K7
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 21754521
Gene end: 21782227
  
Corresponding Affymetrix probe sets: Dr.5386.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000099910
Ensembl peptide - ENSDARP00000145227
NCBI entrez gene - 799441     See in Manteia.
swissprot - E7F0J6
ZFIN ID - ZDB-GENE-101007-5
Ensembl - ENSDARG00000078133
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KDM2AENSG00000173120Homo sapiens
 Kdm2aENSMUSG00000054611Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
kdm2aa / lysine (K)-specific demethylase 2Aa / KDM2A* / Q9Y2K7* / lysine demethylase 2A*ENSDARG0000005965353
kdm2bb / lysine (K)-specific demethylase 2Bb / KDM2B* / Q6P1G2* / Q8NHM5* / lysine demethylase 2B* / Lysine-specific demethylase 2B *ENSDARG0000004601042
kdm2ba / lysine (K)-specific demethylase 2BaENSDARG0000003659320
phf8 / P0CH95 / PHD finger protein 8 / Q80TJ7* / Q9UPP1* / 4921501E09Rik* / RIKEN cDNA 4921501E09 gene* / Histone lysine demethylase PHF8 *ENSDARG0000000658416
phf2 / PHD finger protein 2 / O75151* / Q9WTU0* / Lysine-specific demethylase PHF2 *ENSDARG0000001869116
kdm7ab / lysine (K)-specific demethylase 7Ab / KDM7A* / Q3UWM4* / Q6ZMT4* / lysine demethylase 7A* / Lysine-specific demethylase 7A *ENSDARG0000001855915
btr30 / FBXL19 / zgc:158376 / Q6PCT2* / F-box and leucine rich repeat protein 19*ENSDARG0000010336214
kdm7aa / Q5RHD1 / lysine (K)-specific demethylase 7Aa / PHF8* / Q80TJ7* / Q9UPP1* / 4921501E09Rik* / PHD finger protein 8* / RIKEN cDNA 4921501E09 gene* / Histone lysine demethylase PHF8 *ENSDARG000000181113


Protein motifs (from Interpro)
Interpro ID Name
 IPR001810  F-box domain
 IPR001965  Zinc finger, PHD-type
 IPR002857  Zinc finger, CXXC-type
 IPR003347  JmjC domain
 IPR006553  Leucine-rich repeat, cysteine-containing subtype
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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