ENSDARG00000020924


Danio rerio

Features
Gene ID: ENSDARG00000020924
  
Biological name :myo1ca
  
Synonyms : A5PF48 / myo1ca / myosin Ic, paralog a
  
Possible biological names infered from orthology : MYO1C / myosin IC / O00159 / Q9WTI7 / Unconventional myosin-Ic
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 37785152
Gene end: 37817140
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000053510
Ensembl peptide - ENSDARP00000146110
NCBI entrez gene - 567536     See in Manteia.
RefSeq - NM_001100031
RefSeq - XM_005165347
RefSeq - XM_005165349
RefSeq Peptide - NP_001093501
swissprot - A5PF48
swissprot - A0A0H2UKD8
ZFIN ID - ZDB-GENE-070705-190
Ensembl - ENSDARG00000020924
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MYO1CENSGALG00000002709Gallus gallus
 MYO1CENSG00000197879Homo sapiens
 Myo1cENSMUSG00000017774Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
myo1cb / myosin Ic, paralog b / MYO1C* / O00159* / Q9WTI7* / myosin IC* / Unconventional myosin-Ic *ENSDARG0000006157972
myo1hb / myosin IHb / MYO1H* / Q8N1T3* / Q9D6A1* / myosin IH* / Unconventional myosin-Ih *ENSDARG0000007860358
myo1ha / myosin IHa / MYO1H* / Q8N1T3* / Q9D6A1* / myosin IH* / Unconventional myosin-Ih *ENSDARG0000006196857
myo1b / myosin IB / O43795* / P46735*ENSDARG0000002469442
MYO1G / si:dkeyp-92c9.3 / B0I1T2* / Q5SUA5* / myosin IG* / Unconventional myosin-Ig *ENSDARG0000003610438
MYO1D / si:ch211-94l19.4 / O94832* / Q5SYD0* / myosin ID* / Unconventional myosin-Id *ENSDARG0000003686338
myo1eb / myosin IE, bENSDARG0000000913334
myo1ea / myosin IE, a / MYO1E* / Q12965* / E9Q634* / myosin IE* / Unconventional myosin-Ie *ENSDARG0000003617934
myo1f / myosin IF / O00160*ENSDARG0000007873434
myo15aa / myosin XVAa / Myo15* / MYO15A* / Q9UKN7* / Q9QZZ4* / myosin XVA* / Unconventional myosin-XV *ENSDARG0000007529230
myo15ab / myosin XVAb / Myo15* / MYO15A* / Q9UKN7* / Q9QZZ4* / myosin XVA* / Unconventional myosin-XV *ENSDARG0000007847428
myo15b / myosin XVBENSDARG000000748524


Protein motifs (from Interpro)
Interpro ID Name
 IPR000048  IQ motif, EF-hand binding site
 IPR001609  Myosin head, motor domain
 IPR010926  Class I myosin tail homology domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007018 microtubule-based movement IEA
 biological_processGO:0032835 glomerulus development IMP
 cellular_componentGO:0001726 ruffle IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016459 myosin complex IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0060171 stereocilium membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003774 motor activity IEA
 molecular_functionGO:0003777 microtubule motor activity IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008017 microtubule binding IEA


Pathways (from Reactome)
Pathway description
Regulation of actin dynamics for phagocytic cup formation
B-WICH complex positively regulates rRNA expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000112 gut gut edematous , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0000150 pronephric duct pronephric duct physical object quality , abnormal
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 ZFA:0001558 pronephric tubule pronephric tubule dilated , abnormal
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 ZFA:0001673 pronephric podocyte pronephric podocyte morphology , abnormal
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 ZFA:0005254 renal glomerular capsule renal glomerular capsule increased size , abnormal
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 ZFA:0005313 pronephric glomerular basement membrane pronephric glomerular basement membrane increased thickness , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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