ENSDARG00000023627


Danio rerio

Features
Gene ID: ENSDARG00000023627
  
Biological name :ggps1
  
Synonyms : geranylgeranyl diphosphate synthase 1 / ggps1
  
Possible biological names infered from orthology : Geranylgeranyl pyrophosphate synthase / O95749 / Q9WTN0
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 49727333
Gene end: 49769372
  
Corresponding Affymetrix probe sets: Dr.25151.1.S1_at (Zebrafish Array)   Dr.991.1.S1_at (Zebrafish Array)   Dr.991.2.A1_s_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000134732
Ensembl peptide - ENSDARP00000037908
NCBI entrez gene - 336798     See in Manteia.
RefSeq - NM_001291760
RefSeq - NM_001291761
RefSeq Peptide - NP_001278689
RefSeq Peptide - NP_001278690
swissprot - A0A0R4ILW8
swissprot - F1R4B6
ZFIN ID - ZDB-GENE-030131-8742
Ensembl - ENSDARG00000023627
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GGPS1ENSGALG00000042853Gallus gallus
 GGPS1ENSG00000152904Homo sapiens
 Ggps1ENSMUSG00000021302Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000092  Polyprenyl synthetase
 IPR008949  Isoprenoid synthase domain superfamily
 IPR033749  Polyprenyl synthetase, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008299 isoprenoid biosynthetic process IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
Cholesterol biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000023627 ggps1 / geranylgeranyl diphosphate synthase 1 / O95749*  / complex






 

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contact: otassy@igbmc.fr