ENSDARG00000026979


Danio rerio
intermediatefilamentkrt1-c5proteinkeratintypeconservedsitestructuralmoleculeactivity

Features
Gene ID: ENSDARG00000026979
  
Biological name :krt1-c5
  
Synonyms : keratin, type 1, gene c5 / krt1-c5
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 64869176
Gene end: 64883099
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000064982
Ensembl peptide - ENSDARP00000114053
NCBI entrez gene - 767716     See in Manteia.
RefSeq - NM_001076654
RefSeq Peptide - NP_001070122
swissprot - F1QR21
swissprot - A2BF93
ZFIN ID - ZDB-GENE-060316-3
Ensembl - ENSDARG00000026979
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-243g18.2ENSDARG0000004426171
krt18 / Q7ZTS4 / keratin 18 / P05783* / P05784* / Keratin, type I cytoskeletal 18 *ENSDARG0000001840437
zgc:110712 / KRT39* / KRT38* / KRT37* / KRT36* / KRT35* / KRT34* / KRT32* / KRT20* / KRT31* / KRT40* / Q6A163* / KRT33B* / O76009* / O76011* / O76013* / O76014* / O76015* / P35900* / Q14525...ENSDARG0000001936535
zgc:92380 / KRT18* / P05783* / P05784* / keratin 18* / Keratin, type I cytoskeletal 18 *ENSDARG0000004133934
zgc:171226 / KRT39* / KRT38* / KRT37* / KRT36* / KRT35* / KRT34* / KRT32* / KRT20* / KRT31* / KRT40* / Q6A163* / KRT33B* / O76009* / O76011* / O76013* / O76014* / O76015* / P35900* / Q14525...ENSDARG0000004497333
si:ch211-133j6.3 / KRT18 (1 of many) / KRT18* / P05783* / P05784* / keratin 18* / Keratin, type I cytoskeletal 18 *ENSDARG0000005833233
zgc:77517 / KRT18* / P05783* / P05784* / keratin 18* / Keratin, type I cytoskeletal 18 *ENSDARG0000002861831
wu:fk65c09ENSDARG0000006904628


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR002957  Keratin, type I
 IPR018039  Intermediate filament protein, conserved site


Gene Ontology (GO)
cellorganellesupramolecular complexcellorganellesupramolecular complexcellorganellesupramolecular complexcellorganellesupramolecular complexcellorganellesupramolecular complexcellorganellesupramolecular complexcellorganellesupramolecular complexcellorganellesupramolecular complexcellorganellesupramolecular complexcellorganellesupramolecular complexcellcellorganelleorganellesupramolecular complexsupramolecular complex
TypeGO IDTermEv.Code
 cellular_componentGO:0005882 intermediate filament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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