ENSDARG00000028618


Danio rerio

Features
Gene ID: ENSDARG00000028618
  
Biological name :zgc:77517
  
Synonyms : zgc:77517
  
Possible biological names infered from orthology : keratin 18 / Keratin, type I cytoskeletal 18 / KRT18 / P05783 / P05784
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 39360377
Gene end: 39365467
  
Corresponding Affymetrix probe sets: Dr.890.1.S1_at (Zebrafish Array)   NM_200568_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000125691
Ensembl peptide - ENSDARP00000028970
NCBI entrez gene - 393540     See in Manteia.
RefSeq - NM_200568
RefSeq Peptide - NP_956862
swissprot - A8E5I2
swissprot - Q6NYL7
ZFIN ID - ZDB-GENE-040426-1508
Ensembl - ENSDARG00000028618
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KRT18ENSG00000111057Homo sapiens
 Krt18ENSMUSG00000023043Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
krt18 / Q7ZTS4 / keratin 18 / P05783* / P05784* / Keratin, type I cytoskeletal 18 *ENSDARG0000001840466
zgc:92380 / KRT18* / P05783* / P05784* / keratin 18* / Keratin, type I cytoskeletal 18 *ENSDARG0000004133941
si:ch211-133j6.3 / KRT18 (1 of many) / KRT18* / P05783* / P05784* / keratin 18* / Keratin, type I cytoskeletal 18 *ENSDARG0000005833241
si:ch211-243g18.2ENSDARG0000004426134
zgc:171226 / KRT39* / KRT38* / KRT37* / KRT36* / KRT35* / KRT34* / KRT32* / KRT20* / KRT31* / KRT40* / Q6A163* / KRT33B* / O76009* / O76011* / O76013* / O76014* / O76015* / P35900* / Q14525...ENSDARG0000004497334
krt1-c5 / keratin, type 1, gene c5ENSDARG0000002697933
zgc:110712 / KRT39* / KRT38* / KRT37* / KRT36* / KRT35* / KRT34* / KRT32* / KRT20* / KRT31* / KRT40* / Q6A163* / KRT33B* / O76009* / O76011* / O76013* / O76014* / O76015* / P35900* / Q14525...ENSDARG0000001936532
wu:fk65c09ENSDARG0000006904628


Protein motifs (from Interpro)
Interpro ID Name
 IPR001664  Intermediate filament protein
 IPR002957  Keratin, type I
 IPR018039  Intermediate filament protein, conserved site
 IPR027695  Keratin, type I cytoskeletal 18


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005882 intermediate filament IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
Keratinization
Formation of the cornified envelope


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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